General information
PDB ID 5Z3U
Title STRUCTURE OF SNF2-NUCLEOSOME COMPLEX AT SHL2 IN ADP BEFX STATE
PDB header STRUCTURAL PROTEIN/HYDROLASE/DNA
Date 2018-01-08
Experimental method ELECTRON MICROSCOPY
Resolution (A) 4.31
Kind dna
Organism SACCHAROMYCES CEREVISIAE, XENOPUS LAEVIS, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5z3u.pdb OABCDEFGH IJ 0
Biounits:
5z3u.pdb1.pdb OABCDEFGH IJ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Histone Domain P84233_39-132 3.8e-46 1 CL0012 A 37 131 IJ  H-Bb H-Mj S-Bb L-Bb 
CENP-T_C Domain P62799_21-99 5.1e-08 1 CL0012 B 19 98 IJ  H-Bb S-Bb L-Bb 
Histone Domain Q6AZJ8_15-91 5.9e-16 1 CL0012 C 12 90 IJ  H-Bb S-Bb L-Bb 
Histone Domain P02281_33-102 1.1e-21 1 CL0012 D 29 98 IJ  H-Bb S-Bb L-Bb 
Histone Domain P84233_39-132 8.2e-45 1 CL0012 E 40 131 IJ  H-Bb S-Bb L-Bb 
CENP-T_C Domain P62799_21-99 5.2e-08 1 CL0012 F 23 98 IJ  S-Bb L-Bb 
Histone Domain Q6AZJ8_15-91 5.9e-16 1 CL0012 G 12 90 IJ  H-Bb L-Bb 
Histone Domain P02281_33-102 1.1e-21 1 CL0012 H 29 98 IJ  H-Bb L-Bb 
SNF2-rel_dom Domain P22082_770-1065 4.8e-73 1 CL0023 O 770 1065 IJ  H-Bb L-Bb 
Helicase_C Domain P22082_1087-1201 1.8e-20 1 CL0023 O 1087 1201 J  H-Bb S-Bb L-Bb L-Mj 
Histone_H2A_C Family Q6AZJ8_92-120 3.1e-17 1 No_clan C 91 118   
Histone_H2A_C Family Q6AZJ8_92-120 3.1e-17 1 No_clan G 91 118   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/E=2-136 C nucleoplasm
A/E=2-136 C nucleosome
A/E=2-136 F DNA binding
A/E=2-136 F protein heterodimerization activity
B/F=2-103 C host cell nucleus
B/F=2-103 C nucleosome
B/F=2-103 C nucleus
B/F=2-103 F DNA binding
B/F=2-103 F protein heterodimerization activity
B/F=2-103 P DNA-templated transcription, initiation
D/H=5-126 C nucleosome
D/H=5-126 C nucleus
D/H=5-126 F DNA binding
D/H=5-126 F protein heterodimerization activity
O=666-1400 C nucleus
O=666-1400 C SWI/SNF complex
O=666-1400 F ATP binding
O=666-1400 F DNA binding
O=666-1400 F DNA-dependent ATPase activity
O=666-1400 F helicase activity
O=666-1400 F lysine-acetylated histone binding
O=666-1400 F nucleosomal DNA binding
O=666-1400 F rDNA binding
O=666-1400 F RNA polymerase II activating transcription factor binding
O=666-1400 P aggrephagy
O=666-1400 P ATP-dependent chromatin remodeling
O=666-1400 P chromatin remodeling
O=666-1400 P DNA-dependent DNA replication
O=666-1400 P double-strand break repair
O=666-1400 P nucleosome mobilization
O=666-1400 P positive regulation of cell adhesion involved in single-species biofilm formation
O=666-1400 P positive regulation of invasive growth in response to glucose limitation
O=666-1400 P positive regulation of mating type switching
O=666-1400 P positive regulation of transcription by RNA polymerase II
O=666-1400 P positive regulation of transcription from RNA polymerase II promoter in response to amino acid starvation
O=666-1400 P response to oxidative stress
O=666-1400 P strand invasion
Sequences
Download file with secondary structure created by Stride  
5z3u.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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O (protein): 
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