General information
PDB ID 5ZJS
Title STRUCTURE OF ABDB/EXD COMPLEX BOUND TO A 'BLUE14' DNA SEQUENCE
PDB header TRANSCRIPTION/DNA
Date 2018-03-22
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.9
Kind dna
Organism DROSOPHILA MELANOGASTER
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5zjs.pdb AB CD 0
Biounits:
5zjs.pdb1.pdb AB CD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Homeodomain Domain P09087_389-444 2.2e-20 1 CL0123 A 13 76 CD  H-Bb H-Mj L-Bb L-Mn 
Homeodomain Domain P40427_242-298 1.7e-20 1 CL0123 B 3 62 CD  H-Bb H-Mj L-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A=369-452 C nucleus
A=369-452 C polytene chromosome band
A=369-452 F DNA-binding transcription factor activity
A=369-452 F DNA-binding transcription factor activity, RNA polymerase II-specific
A=369-452 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
A=369-452 F transcription regulatory region sequence-specific DNA binding
A=369-452 P determination of genital disc primordium
A=369-452 P external genitalia morphogenesis
A=369-452 P female genitalia development
A=369-452 P genital disc anterior/posterior pattern formation
A=369-452 P genital disc sexually dimorphic development
A=369-452 P germ cell migration
A=369-452 P gonadal mesoderm development
A=369-452 P imaginal disc-derived female genitalia development
A=369-452 P male genitalia development
A=369-452 P male gonad development
A=369-452 P male pigmentation
A=369-452 P midgut development
A=369-452 P negative regulation of cardioblast cell fate specification
A=369-452 P negative regulation of female receptivity
A=369-452 P negative regulation of salivary gland boundary specification
A=369-452 P negative regulation of striated muscle tissue development
A=369-452 P neuroendocrine cell differentiation
A=369-452 P open tracheal system development
A=369-452 P pole cell migration
A=369-452 P positive regulation of apoptotic process involved in morphogenesis
A=369-452 P positive regulation of transcription by RNA polymerase II
A=369-452 P segment specification
A=369-452 P specification of segmental identity, abdomen
A=369-452 P sperm storage
A=369-452 P spiracle morphogenesis, open tracheal system
B=237-310 C cytoplasm
B=237-310 C nucleus
B=237-310 C protein-DNA complex
B=237-310 C RNA polymerase II transcription regulator complex
B=237-310 C transcription regulator complex
B=237-310 F activating transcription factor binding
B=237-310 F cis-regulatory region sequence-specific DNA binding
B=237-310 F DNA binding
B=237-310 F DNA-binding transcription factor activity
B=237-310 F DNA-binding transcription factor activity, RNA polymerase II-specific
B=237-310 F protein heterodimerization activity
B=237-310 F sequence-specific DNA binding
B=237-310 F transcription coactivator activity
B=237-310 F transcription coregulator activity
B=237-310 F transcription factor binding
B=237-310 P animal organ morphogenesis
B=237-310 P brain development
B=237-310 P embryonic organ development
B=237-310 P eye development
B=237-310 P neuron development
B=237-310 P oenocyte development
B=237-310 P peripheral nervous system development
B=237-310 P positive regulation of transcription by RNA polymerase II
B=237-310 P positive regulation of transcription, DNA-templated
B=237-310 P regulation of cell fate specification
B=237-310 P regulation of transcription by RNA polymerase II
B=237-310 P salivary gland boundary specification
B=237-310 P somatic muscle development
Sequences
Download file with secondary structure created by Stride  
5zjs.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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B (protein): 
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