General information
PDB ID 6CCV
Title CRYSTAL STRUCTURE OF A MYCOBACTERIUM SMEGMATIS RNA POLYMERASE TRANSCRIPTION INITIATION COMPLEX WITH INHIBITOR RIFAMPICIN
PDB header TRANSCRIPTION
Date 2018-02-07
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.05
Kind dna
Organism MYCOBACTERIUM SMEGMATIS STR. MC2 155, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6ccv.pdb ABCDEFGJT OP 0
Biounits:
6ccv.pdb1.pdb ABCDEFGJT OP 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNA_pol_A_bac Domain A0QSL8_52-152 5.9e-26 1 No_clan A 52 169   
RNA_pol_L Domain A0QSL8_24-219 1e-18 1 CL0509 A 24 219   
RNA_pol_A_bac Domain A0QSL8_52-152 7e-26 1 No_clan B 52 169   
RNA_pol_L Domain A0QSL8_24-219 1.2e-18 1 CL0509 B 24 219   
RNA_pol_Rpb2_6 Domain P60281_634-1053 3.3e-158 1 CL0410 C 634 1053   
RNA_pol_Rpb2_45 Domain P60281_507-573 5.8e-28 1 No_clan C 507 573   
RNA_pol_Rpb2_3 Domain P60281_429-497 6.5e-28 1 No_clan C 429 497   
RNA_pol_Rpb2_7 Domain P60281_1055-1131 9.8e-26 1 No_clan C 1055 1131   
RNA_pol_Rpb2_2 Domain P60281_172-370 3.2e-17 1 No_clan C 172 370   
RNA_pol_Rpb1_1 Domain A0QS66_4-417 3.7e-82 1 No_clan D 4 417 O  L-Bb 
RNA_pol_Rpb1_5 Domain A0QS66_840-1007 6.8e-38 1 No_clan D 842 1029   
RNA_pol_Rpb1_2 Domain A0QS66_419-561 6.7e-36 1 No_clan D 419 561   
RNA_pol_Rpb1_3 Domain A0QS66_564-735 1.5e-27 1 No_clan D 564 735   
RNA_pol_Rpb1_5 Domain A0QS66_1032-1185 5.3e-14 1 No_clan D 1053 1219   
RNA_pol_Rpb1_4 Domain A0QS66_748-841 2.1e-06 1 No_clan D 748 841   
Sigma70_r2 Domain A0QW02_233-303 1.1e-22 1 CL0123 F 233 303 O  H-Bb H-Mj H-Mn 
Sigma70_r4 Domain A0QW02_401-454 1.5e-18 1 CL0123 F 401 454 OP  H-Bb H-Mj L-Bb L-Mj 
RNA_pol_A_CTD Domain A0QSL8_251-303 2.3e-26 1 CL0198 T 251 303 OP  H-Bb L-Bb 
RNA_pol_Rpb2_1 Family P60281_43-416 3.4e-22 1 No_clan C 43 416   
RNA_pol_Rpb6 Family A0QWT1_39-102 9.8e-13 1 No_clan E 39 102   
Sigma70_r3 Family A0QW02_312-389 5e-29 1 CL0123 F 312 389 P  H-Bb H-Mj 
Sigma70_r1_2 Family A0QW02_164-197 1.4e-16 1 No_clan F 164 197 O   
RbpA Family A0QZ11_26-106 2.8e-29 1 No_clan J 26 106 O  L-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B/T=1-350 F DNA binding
A/B/T=1-350 F DNA-directed 5'-3' RNA polymerase activity
A/B/T=1-350 F protein dimerization activity
A/B/T=1-350 P transcription, DNA-templated
C=1-1169 F DNA binding
C=1-1169 F DNA-directed 5'-3' RNA polymerase activity
C=1-1169 F ribonucleoside binding
C=1-1169 P response to antibiotic
C=1-1169 P transcription, DNA-templated
D=1-1317 F DNA binding
D=1-1317 F DNA-directed 5'-3' RNA polymerase activity
D=1-1317 F magnesium ion binding
D=1-1317 F zinc ion binding
D=1-1317 P transcription, DNA-templated
E=1-107 F DNA binding
E=1-107 F DNA-directed 5'-3' RNA polymerase activity
E=1-107 P transcription, DNA-templated
J=1-114 F bacterial-type RNA polymerase core enzyme binding
J=1-114 P positive regulation of transcription, DNA-templated
J=1-114 P response to antibiotic
Sequences
Download file with secondary structure created by Stride  
6ccv.pdb1.pdb:   [ download sequences in FASTA format ]
O (dna): 
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P (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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J (protein): 
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T (protein): 
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