General information
PDB ID 6CNF
Title YEAST RNA POLYMERASE III ELONGATION COMPLEX
PDB header TRANSCRIPTION/DNA
Date 2018-03-08
Experimental method ELECTRON MICROSCOPY
Resolution (A) 4.5
Kind dna
Organism SACCHAROMYCES CEREVISIAE S288C
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6cnf.pdb ABCDEFGHIJKLMNOPQRS XY 0
Biounits:
6cnf.pdb1.pdb ABCDEFGHIJKLMNOPQRS XY 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNA_pol_Rpb1_1 Domain P04051_10-368 3.4e-79 1 No_clan A 10 368 Y   
RNA_pol_Rpb1_2 Domain P04051_370-537 8.5e-76 1 No_clan A 370 537 Y   
RNA_pol_Rpb1_5 Domain P04051_855-1384 2.1e-61 1 No_clan A 855 1384 XY   
RNA_pol_Rpb1_3 Domain P04051_540-717 3.3e-38 1 No_clan A 540 717   
RNA_pol_Rpb1_4 Domain P04051_742-848 5.8e-30 1 No_clan A 742 848   
RNA_pol_Rpb2_6 Domain P22276_684-1056 7.6e-125 1 CL0410 B 684 1056 Y   
RNA_pol_Rpb2_2 Domain P22276_201-378 3.3e-43 1 No_clan B 201 378   
RNA_pol_Rpb2_7 Domain P22276_1058-1144 1.6e-33 1 No_clan B 1058 1144 Y   
RNA_pol_Rpb2_4 Domain P22276_555-616 3e-24 1 No_clan B 555 616   
RNA_pol_Rpb2_3 Domain P22276_456-520 2.7e-17 1 No_clan B 456 520 X   
RNA_pol_Rpb2_5 Domain P22276_637-677 3.1e-08 1 No_clan B 637 677   
RNA_pol_A_bac Domain P07703_83-220 7.6e-30 1 No_clan C 83 220   
RNA_pol_L Domain P07703_53-325 5e-23 1 CL0509 C 53 325   
RNA_pol_Rpb5_C Domain P20434_142-214 1.5e-30 1 No_clan E 142 214   
RNA_pol_Rpb5_N Domain P20434_6-100 3.4e-29 1 CL0236 E 6 100   
RNA_pol_Rbc25 Domain P35718_83-211 1.4e-35 1 CL0021 G 83 211   
SHS2_Rpb7-N Domain P35718_8-64 1.1e-12 1 CL0319 G 8 64   
RNA_POL_M_15KD Domain Q04307_2-38 2.1e-18 1 CL0167 I 2 38   
RNA_pol_N Domain P22139_2-60 9e-29 1 No_clan J 2 60   
RNA_pol_L_2 Domain P28000_60-134 3e-34 1 CL0509 K 60 134   
DNA_RNApol_7kD Domain P40422_29-60 1e-16 1 CL0167 L 29 60   
HTH_9 Domain P32349_47-109 6.7e-21 1 CL0123 O 47 109   
TFIIB Domain P29056_171-265 1.2e-32 1 CL0065 R 171 265 Y  H-Bb L-Bb 
TBP Domain P13393_154-237 4.6e-32 1 CL0407 R 480 563 XY  S-Bb S-Mn L-Bb 
TBP Domain P13393_64-146 5.1e-32 1 CL0407 R 390 472 XY  S-Bb S-Mn L-Bb 
TFIIB Domain P29056_76-167 6.9e-30 1 CL0065 R 76 167 XY  H-Bb H-Mj L-Bb 
BRF1 Domain P29056_463-506 6.9e-13 1 No_clan R 603 650   
TF_Zn_Ribbon Domain P29056_2-41 5.7e-11 1 CL0167 R 2 72 Y   
Myb_DNA-bind_7 Domain P46678_95-176 2.7e-26 1 CL0123 S 410 497 X  H-Bb L-Bb 
RNA_pol_Rpb2_1 Family P22276_56-431 8e-63 1 No_clan B 56 431 X  L-Bb 
RNA_pol_Rpb4 Family P47076_10-161 2.3e-32 1 CL0426 D 10 161   
RNA_pol_Rpb6 Family P20435_79-132 2.6e-14 1 No_clan F 79 132   
RNA_pol_Rpb8 Family P20436_7-146 1.9e-45 1 CL0021 H 7 146   
RPC5 Family P36121_71-262 1.5e-11 1 CL0662 M 71 257   
RNA_pol_Rpc4 Family P25441_301-422 2.2e-16 1 CL0662 N 318 422   
RNA_pol_Rpc82 Family P32349_189-487 8.1e-48 1 CL0123 O 189 450   
RNA_pol_Rpc34 Family P32910_10-316 9.1e-91 1 CL0123 P 10 294 Y  H-Bb L-Bb 
RNA_pol_3_Rpc31 Family P17890_36-89 3.1e-06 0 No_clan Q 36 1080   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A=1-1460 C nucleoplasm
A=1-1460 C RNA polymerase III complex
A=1-1460 F DNA binding
A=1-1460 F DNA-directed 5'-3' RNA polymerase activity
A=1-1460 F metal ion binding
A=1-1460 P termination of RNA polymerase III transcription
A=1-1460 P tRNA transcription by RNA polymerase III
B=1-1149 C nucleoplasm
B=1-1149 C RNA polymerase III complex
B=1-1149 F DNA binding
B=1-1149 F DNA-directed 5'-3' RNA polymerase activity
B=1-1149 F metal ion binding
B=1-1149 F ribonucleoside binding
B=1-1149 P termination of RNA polymerase III transcription
B=1-1149 P tRNA transcription by RNA polymerase III
C=1-335 C nucleoplasm
C=1-335 C RNA polymerase I complex
C=1-335 C RNA polymerase III complex
C=1-335 F DNA binding
C=1-335 F protein dimerization activity
C=1-335 F RNA polymerase I activity
C=1-335 P ribosome biogenesis
C=1-335 P termination of RNA polymerase III transcription
C=1-335 P transcription by RNA polymerase I
C=1-335 P transposon integration
C=1-335 P tRNA transcription by RNA polymerase III
D=1-161 C cytosol
D=1-161 C nucleoplasm
D=1-161 C nucleus
D=1-161 C RNA polymerase III complex
D=1-161 F DNA-directed 5'-3' RNA polymerase activity
D=1-161 F nucleotide binding
D=1-161 P termination of RNA polymerase III transcription
D=1-161 P transcription initiation from RNA polymerase III promoter
D=1-161 P tRNA transcription by RNA polymerase III
E=1-215 C host cell nucleus
E=1-215 C nucleoplasm
E=1-215 C RNA polymerase I complex
E=1-215 C RNA polymerase II, core complex
E=1-215 C RNA polymerase III complex
E=1-215 F DNA binding
E=1-215 F RNA polymerase I activity
E=1-215 P ribosome biogenesis
E=1-215 P termination of RNA polymerase III transcription
E=1-215 P transcription by RNA polymerase I
E=1-215 P transcription by RNA polymerase II
E=1-215 P transcription by RNA polymerase III
E=1-215 P transcription, RNA-templated
E=1-215 P tRNA transcription by RNA polymerase III
F=1-155 C cytoplasm
F=1-155 C nucleoplasm
F=1-155 C RNA polymerase I complex
F=1-155 C RNA polymerase II, core complex
F=1-155 C RNA polymerase III complex
F=1-155 F DNA binding
F=1-155 F RNA polymerase I activity
F=1-155 P ribosome biogenesis
F=1-155 P termination of RNA polymerase III transcription
F=1-155 P transcription by RNA polymerase I
F=1-155 P transcription by RNA polymerase II
F=1-155 P transcription by RNA polymerase III
F=1-155 P transcription, RNA-templated
F=1-155 P tRNA transcription by RNA polymerase III
G=1-212 C nucleoplasm
G=1-212 C RNA polymerase III complex
G=1-212 F DNA binding
G=1-212 F DNA-directed 5'-3' RNA polymerase activity
G=1-212 P termination of RNA polymerase III transcription
G=1-212 P transcription initiation from RNA polymerase III promoter
G=1-212 P tRNA transcription by RNA polymerase III
H=1-146 C nucleoplasm
H=1-146 C RNA polymerase I complex
H=1-146 C RNA polymerase II, core complex
H=1-146 C RNA polymerase III complex
H=1-146 F DNA binding
H=1-146 F RNA polymerase I activity
H=1-146 P ribosome biogenesis
H=1-146 P termination of RNA polymerase III transcription
H=1-146 P transcription by RNA polymerase I
H=1-146 P transcription by RNA polymerase II
H=1-146 P transcription by RNA polymerase III
H=1-146 P transcription, RNA-templated
H=1-146 P tRNA transcription by RNA polymerase III
I=1-110 C nucleolus
I=1-110 C nucleoplasm
I=1-110 C RNA polymerase III complex
I=1-110 F DNA-directed 5'-3' RNA polymerase activity
I=1-110 F nucleic acid binding
I=1-110 F zinc ion binding
I=1-110 P termination of RNA polymerase III transcription
I=1-110 P tRNA 3'-trailer cleavage
I=1-110 P tRNA transcription by RNA polymerase III
J=1-70 C nucleoplasm
J=1-70 C RNA polymerase I complex
J=1-70 C RNA polymerase II, core complex
J=1-70 C RNA polymerase III complex
J=1-70 F DNA binding
J=1-70 F RNA polymerase I activity
J=1-70 F zinc ion binding
J=1-70 P ribosome biogenesis
J=1-70 P termination of RNA polymerase III transcription
J=1-70 P transcription by RNA polymerase I
J=1-70 P transcription by RNA polymerase II
J=1-70 P transcription by RNA polymerase III
J=1-70 P transcription, RNA-templated
J=1-70 P tRNA transcription by RNA polymerase III
K=1-142 C nucleoplasm
K=1-142 C RNA polymerase I complex
K=1-142 C RNA polymerase III complex
K=1-142 F DNA binding
K=1-142 F protein dimerization activity
K=1-142 F RNA polymerase I activity
K=1-142 P ribosome biogenesis
K=1-142 P termination of RNA polymerase III transcription
K=1-142 P transcription by RNA polymerase I
K=1-142 P tRNA transcription by RNA polymerase III
L=1-70 C cytoplasm
L=1-70 C nucleolus
L=1-70 C nucleoplasm
L=1-70 C nucleus
L=1-70 C RNA polymerase I complex
L=1-70 C RNA polymerase II, core complex
L=1-70 C RNA polymerase III complex
L=1-70 F DNA binding
L=1-70 F RNA polymerase I activity
L=1-70 F zinc ion binding
L=1-70 P ribosome biogenesis
L=1-70 P termination of RNA polymerase III transcription
L=1-70 P transcription by RNA polymerase I
L=1-70 P transcription by RNA polymerase II
L=1-70 P transcription by RNA polymerase III
L=1-70 P transcription, RNA-templated
L=1-70 P tRNA transcription by RNA polymerase III
M=1-282 C RNA polymerase III complex
M=1-282 F DNA-directed 5'-3' RNA polymerase activity
M=1-282 P tRNA transcription by RNA polymerase III
N=1-422 C nucleoplasm
N=1-422 C RNA polymerase III complex
N=1-422 F DNA binding
N=1-422 F DNA-directed 5'-3' RNA polymerase activity
N=1-422 P termination of RNA polymerase III transcription
N=1-422 P tRNA transcription by RNA polymerase III
O=1-654 C cytoplasm
O=1-654 C nucleoplasm
O=1-654 C RNA polymerase III complex
O=1-654 F DNA-directed 5'-3' RNA polymerase activity
O=1-654 F single-stranded DNA binding
O=1-654 P termination of RNA polymerase III transcription
O=1-654 P tRNA transcription by RNA polymerase III
P=1-317 C cytoplasm
P=1-317 C mitochondrion
P=1-317 C nucleoplasm
P=1-317 C nucleus
P=1-317 C RNA polymerase III complex
P=1-317 F DNA-directed 5'-3' RNA polymerase activity
P=1-317 P termination of RNA polymerase III transcription
P=1-317 P tRNA transcription by RNA polymerase III
Q=1-251 C nucleoplasm
Q=1-251 C RNA polymerase III complex
Q=1-251 F DNA binding
Q=1-251 F DNA-directed 5'-3' RNA polymerase activity
Q=1-251 P termination of RNA polymerase III transcription
Q=1-251 P transcription initiation from RNA polymerase III promoter
Q=1-251 P tRNA transcription by RNA polymerase III
R=1-382, R=438-596 C nucleoplasm
R=1-382, R=438-596 C nucleus
R=1-382, R=438-596 C transcription factor TFIIIB complex
R=1-382, R=438-596 F DNA binding
R=1-382, R=438-596 F metal ion binding
R=1-382, R=438-596 F RNA polymerase III core binding
R=1-382, R=438-596 F RNA polymerase III general transcription initiation factor activity
R=1-382, R=438-596 F RNA polymerase III type 3 promoter sequence-specific DNA binding
R=1-382, R=438-596 F TBP-class protein binding
R=1-382, R=438-596 F TFIIIC-class transcription factor complex binding
R=1-382, R=438-596 F transcription factor binding
R=1-382, R=438-596 P DNA-templated transcription open complex formation
R=1-382, R=438-596 P DNA-templated transcription, initiation
R=1-382, R=438-596 P RNA polymerase III preinitiation complex assembly
R=1-382, R=438-596 P transposon integration
R=61-240 C nucleoplasm
R=61-240 C nucleus
R=61-240 C protein-containing complex
R=61-240 C transcription factor TFIIA complex
R=61-240 C transcription factor TFIID complex
R=61-240 C transcription factor TFIIIB complex
R=61-240 C transcription regulator complex
R=61-240 F chromatin binding
R=61-240 F disordered domain specific binding
R=61-240 F DNA binding, bending
R=61-240 F DNA-binding transcription factor activity
R=61-240 F RNA polymerase I general transcription initiation factor binding
R=61-240 F RNA polymerase II activating transcription factor binding
R=61-240 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
R=61-240 F RNA polymerase II core promoter sequence-specific DNA binding
R=61-240 F RNA polymerase II general transcription initiation factor activity
R=61-240 F RNA polymerase III general transcription initiation factor activity
R=61-240 F RNA polymerase III transcription regulatory region sequence-specific DNA binding
R=61-240 F TFIIA-class transcription factor complex binding
R=61-240 F transcription factor binding
R=61-240 P nucleolar large rRNA transcription by RNA polymerase I
R=61-240 P RNA polymerase I preinitiation complex assembly
R=61-240 P RNA polymerase II preinitiation complex assembly
R=61-240 P RNA polymerase III preinitiation complex assembly
R=61-240 P transcription by RNA polymerase II
R=61-240 P transposon integration
S=1-594 C nucleoplasm
S=1-594 C transcription factor TFIIIB complex
S=1-594 F RNA polymerase III general transcription initiation factor activity
S=1-594 F TFIIIC-class transcription factor complex binding
S=1-594 P DNA-templated transcription open complex formation
S=1-594 P positive regulation of transposon integration
S=1-594 P regulation of transcription, DNA-templated
S=1-594 P RNA polymerase III preinitiation complex assembly
Sequences
Download file with secondary structure created by Stride  
6cnf.pdb1.pdb:   [ download sequences in FASTA format ]
X (dna): 
Click "SHOW" for view sequence
Y (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
C (protein): 
Click "SHOW" for view sequence
D (protein): 
Click "SHOW" for view sequence
E (protein): 
Click "SHOW" for view sequence
F (protein): 
Click "SHOW" for view sequence
G (protein): 
Click "SHOW" for view sequence
H (protein): 
Click "SHOW" for view sequence
I (protein): 
Click "SHOW" for view sequence
J (protein): 
Click "SHOW" for view sequence
K (protein): 
Click "SHOW" for view sequence
L (protein): 
Click "SHOW" for view sequence
M (protein): 
Click "SHOW" for view sequence
N (protein): 
Click "SHOW" for view sequence
O (protein): 
Click "SHOW" for view sequence
P (protein): 
Click "SHOW" for view sequence
Q (protein): 
Click "SHOW" for view sequence
R (protein): 
Click "SHOW" for view sequence
S (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2021

text