General information
PDB ID 6CVQ
Title HUMAN APRATAXIN (APTX) H201Q BOUND TO RNA-DNA, AMP AND ZN PRODUCT COMPLEX
PDB header HYDROLASE/DNA/RNA
Date 2018-03-28
Experimental method X-RAY DIFFRACTION
Resolution (A) 1.65
Kind hybrid
Organism HOMO SAPIENS
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB  PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6cvq.pdb AB DEGH DG 0
Biounits:
6cvq.pdb1.pdb A DE D 1
6cvq.pdb2.pdb B GH G 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
zf-C2HE Domain Q7Z2E3_297-354 2.1e-13 1 CL0361 A 283 340 E  H-Bb L-Bb 
zf-C2HE Domain Q7Z2E3_297-354 2.1e-13 1 CL0361 B 283 340 H  H-Bb 
DcpS_C Family Q7Z2E3_181-292 6.6e-33 1 CL0265 A 167 278 DE  H-Bb L-Bb 
DcpS_C Family Q7Z2E3_181-292 6.6e-33 1 CL0265 B 167 278 GH  H-Bb L-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=179-354 C chromatin
A/B=179-354 C cytoplasm
A/B=179-354 C nucleolus
A/B=179-354 C nucleoplasm
A/B=179-354 C nucleus
A/B=179-354 F chromatin binding
A/B=179-354 F damaged DNA binding
A/B=179-354 F DNA 5'-adenosine monophosphate hydrolase activity
A/B=179-354 F double-stranded DNA binding
A/B=179-354 F double-stranded RNA binding
A/B=179-354 F metal ion binding
A/B=179-354 F mismatched DNA binding
A/B=179-354 F phosphoglycolate phosphatase activity
A/B=179-354 F phosphoprotein binding
A/B=179-354 F polynucleotide 3'-phosphatase activity
A/B=179-354 F protein N-terminus binding
A/B=179-354 F single-strand break-containing DNA binding
A/B=179-354 F single-stranded DNA binding
A/B=179-354 P cellular response to DNA damage stimulus
A/B=179-354 P DNA ligation
A/B=179-354 P double-strand break repair
A/B=179-354 P regulation of protein stability
A/B=179-354 P response to hydrogen peroxide
A/B=179-354 P single strand break repair
Sequences
Download file with secondary structure created by Stride  
6cvq.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
Click "SHOW" for view sequence
D (hybrid): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
6cvq.pdb2.pdb:   [ download sequences in FASTA format ]
H (dna): 
Click "SHOW" for view sequence
G (hybrid): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2021

text