General information
PDB ID 6EDT
Title MYCOBACTERIUM TUBERCULOSIS RNAP OPEN PROMOTER COMPLEX WITH RBPA/CARD AND AP3 PROMOTER
PDB header TRANSCRIPTION/DNA
Date 2018-08-10
Experimental method ELECTRON MICROSCOPY
Resolution (A) N/A
Kind dna
Organism MYCOBACTERIUM TUBERCULOSIS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6edt.pdb ABCDEFJM OP 0
Biounits:
6edt.pdb1.pdb ABCDEFJM OP 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNA_pol_A_bac Domain P9WGZ1_52-152 6.6e-26 1 No_clan A 52 152   
RNA_pol_L Domain P9WGZ1_24-219 3.4e-19 1 CL0509 A 24 219   
RNA_pol_A_bac Domain P9WGZ1_52-152 7.4e-26 1 No_clan B 52 152   
RNA_pol_L Domain P9WGZ1_24-219 4.1e-19 1 CL0509 B 24 219   
RNA_pol_Rpb2_6 Domain P9WGY9_643-1062 1.3e-155 1 CL0410 C 643 1062 P   
RNA_pol_Rpb2_3 Domain P9WGY9_438-506 6.6e-28 1 No_clan C 438 506 O  L-Mj 
RNA_pol_Rpb2_45 Domain P9WGY9_516-582 1.2e-27 1 No_clan C 516 582   
RNA_pol_Rpb2_2 Domain P9WGY9_181-379 1.5e-26 1 No_clan C 181 379 OP  L-Bb 
RNA_pol_Rpb2_7 Domain P9WGY9_1064-1140 1e-25 1 No_clan C 1064 1140   
RNA_pol_Rpb1_1 Domain P9WGY7_4-417 2.5e-82 1 No_clan D 4 417 OP  H-Bb L-Bb 
RNA_pol_Rpb1_5 Domain P9WGY7_843-1218 5e-54 1 No_clan D 843 1218 P   
RNA_pol_Rpb1_2 Domain P9WGY7_419-561 1.8e-35 1 No_clan D 419 561 P   
RNA_pol_Rpb1_3 Domain P9WGY7_564-736 4.8e-27 1 No_clan D 564 736   
RNA_pol_Rpb1_4 Domain P9WGY7_748-843 6.7e-08 1 No_clan D 748 843   
Sigma70_r2 Domain P9WGI1_295-365 1.2e-22 1 CL0123 F 295 365 OP  H-Bb H-Mj H-Mn 
Sigma70_r4 Domain P9WGI1_463-516 7.5e-19 1 CL0123 F 463 516 OP  H-Bb H-Mj L-Bb L-Mj 
RNA_pol_Rpb2_1 Family P9WGY9_52-425 2.5e-21 1 No_clan C 52 425 OP  L-Bb 
RNA_pol_Rpb6 Family P9WGY5_42-105 5.8e-14 1 No_clan E 42 105   
Sigma70_r3 Family P9WGI1_374-451 5.5e-29 1 CL0123 F 374 451 P  H-Bb 
Sigma70_r1_2 Family P9WGI1_226-259 1.5e-16 1 No_clan F 226 259 O   
RbpA Family P9WHJ5_4-106 4.5e-40 1 No_clan J 4 106 OP  L-Bb 
CarD_CdnL_TRCF Family P9WJG3_3-111 8.1e-20 1 CL0123 M 3 111 PO  H-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=1-347 C cell wall
A/B=1-347 C cytoplasm
A/B=1-347 C cytosol
A/B=1-347 C plasma membrane
A/B=1-347 F DNA binding
A/B=1-347 F DNA-directed 5'-3' RNA polymerase activity
A/B=1-347 F protein dimerization activity
A/B=1-347 P transcription, DNA-templated
C=7-1140 C cell wall
C=7-1140 C cytosol
C=7-1140 C plasma membrane
C=7-1140 F DNA binding
C=7-1140 F DNA-directed 5'-3' RNA polymerase activity
C=7-1140 F ribonucleoside binding
C=7-1140 P response to antibiotic
C=7-1140 P transcription, DNA-templated
D=1-1316 C cell wall
D=1-1316 C plasma membrane
D=1-1316 F DNA binding
D=1-1316 F DNA-directed 5'-3' RNA polymerase activity
D=1-1316 F magnesium ion binding
D=1-1316 F zinc ion binding
D=1-1316 P transcription, DNA-templated
E=2-110 C cell wall
E=2-110 F DNA binding
E=2-110 F DNA-directed 5'-3' RNA polymerase activity
E=2-110 P transcription, DNA-templated
F=1-528 C cell wall
F=1-528 C cytoplasm
F=1-528 C plasma membrane
F=1-528 F DNA binding
F=1-528 F DNA-binding transcription factor activity
F=1-528 F sigma factor activity
F=1-528 P pathogenesis
F=1-528 P response to water
F=1-528 P transcription initiation from bacterial-type RNA polymerase promoter
J=1-111 F bacterial-type RNA polymerase core enzyme binding
J=1-111 F bacterial-type RNA polymerase holo enzyme binding
J=1-111 P positive regulation of transcription, DNA-templated
M=1-162 P pathogenesis
M=1-162 P regulation of growth rate
M=1-162 P stringent response
Sequences
Download file with secondary structure created by Stride  
6edt.pdb1.pdb:   [ download sequences in FASTA format ]
O (dna): 
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P (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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J (protein): 
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M (protein): 
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