General information
PDB ID 6ERP
Title STRUCTURE OF THE HUMAN MITOCHONDRIAL TRANSCRIPTION INITIATION COMPLEX AT THE LSP PROMOTER
PDB header TRANSCRIPTION
Date 2017-10-18
Experimental method X-RAY DIFFRACTION
Resolution (A) 4.5
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6erp.pdb CGABFJ DEHI 0
Biounits:
6erp.pdb1.pdb CAF DE 1
6erp.pdb2.pdb GBJ HI 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RPOL_N Domain O00411_410-704 1.9e-53 1 No_clan A 410 704 DE  L-Mj L-Mn 
RPOL_N Domain O00411_410-704 3.3e-51 1 No_clan B 410 704 IH  S-Bb L-Mj L-Mn 
HMG_box Domain Q00059_50-118 8.5e-21 1 CL0114 C 50 118 DE  H-Bb H-Mj H-Mn L-Bb L-Mn 
HMG_box_2 Domain Q00059_152-219 7e-14 1 CL0114 C 152 219 DE  H-Bb H-Mj H-Mn L-Bb L-Mn 
RrnaAD Domain Q9H5Q4_72-379 6.3e-19 1 CL0063 F 80 379 D  H-Bb 
HMG_box Domain Q00059_50-118 8.5e-21 1 CL0114 G 50 118 HI  H-Bb H-Mn L-Bb L-Mj L-Mn 
HMG_box_2 Domain Q00059_152-219 7e-14 1 CL0114 G 152 219 HI  L-Bb L-Mn 
RrnaAD Domain Q9H5Q4_72-379 6.3e-19 1 CL0063 J 80 379 HI  H-Bb L-Bb 
RNA_pol Family O00411_831-1230 5.2e-159 1 No_clan A 831 1230 E  S-Bb L-Bb L-Mj 
RNA_pol Family O00411_831-1230 5.1e-159 1 No_clan B 831 1230 HI  H-Bb S-Bb L-Bb L-Mj 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=105-1230 C mitochondrial DNA-directed RNA polymerase complex
A/B=105-1230 C mitochondrial matrix
A/B=105-1230 C mitochondrial nucleoid
A/B=105-1230 C mitochondrion
A/B=105-1230 C protein-containing complex
A/B=105-1230 F DNA-directed 5'-3' RNA polymerase activity
A/B=105-1230 F mitochondrial promoter sequence-specific DNA binding
A/B=105-1230 F RNA binding
A/B=105-1230 F sequence-specific DNA binding
A/B=105-1230 P mitochondrial transcription
A/B=105-1230 P mitochondrion organization
A/B=105-1230 P transcription initiation from mitochondrial promoter
C/G=43-245 C cytosol
C/G=43-245 C mitochondrial matrix
C/G=43-245 C mitochondrial nucleoid
C/G=43-245 C mitochondrion
C/G=43-245 C nuclear chromatin
C/G=43-245 C nucleus
C/G=43-245 C protein-containing complex
C/G=43-245 F chromatin binding
C/G=43-245 F DNA binding, bending
C/G=43-245 F heat shock protein binding
C/G=43-245 F mitochondrial promoter sequence-specific DNA binding
C/G=43-245 F mitochondrial sequence-specific DNA-binding transcription factor activity
C/G=43-245 F RNA binding
C/G=43-245 F sequence-specific DNA binding
C/G=43-245 F transcription coactivator binding
C/G=43-245 F transcription factor binding
C/G=43-245 P chromatin remodeling
C/G=43-245 P mitochondrial respiratory chain complex assembly
C/G=43-245 P mitochondrial transcription
C/G=43-245 P mitochondrion organization
C/G=43-245 P positive regulation of transcription, DNA-templated
C/G=43-245 P regulation of transcription by RNA polymerase II
C/G=43-245 P regulation of transcription, DNA-templated
C/G=43-245 P transcription initiation from mitochondrial promoter
F/J=21-396 C mitochondrial matrix
F/J=21-396 C mitochondrial nucleoid
F/J=21-396 C mitochondrion
F/J=21-396 F mitochondrial sequence-specific DNA-binding transcription factor activity
F/J=21-396 F RNA binding
F/J=21-396 F rRNA (adenine-N6,N6-)-dimethyltransferase activity
F/J=21-396 F transcription coregulator activity
F/J=21-396 P mitochondrial transcription
F/J=21-396 P mitochondrion organization
F/J=21-396 P rRNA methylation
F/J=21-396 P transcription initiation from mitochondrial promoter
Sequences
Download file with secondary structure created by Stride  
6erp.pdb1.pdb:   [ download sequences in FASTA format ]
D (dna): 
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E (dna): 
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A (protein): 
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C (protein): 
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F (protein): 
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6erp.pdb2.pdb:   [ download sequences in FASTA format ]
H (dna): 
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I (dna): 
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B (protein): 
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G (protein): 
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J (protein): 
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