General information
PDB ID 6EXV
Title STRUCTURE OF MAMMALIAN RNA POLYMERASE II ELONGATION COMPLEX INHIBITED BY ALPHA-AMANITIN
PDB header TRANSCRIPTION
Date 2017-11-09
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.6
Kind hybrid
Organism SUS SCROFA, AMANITA PHALLOIDES, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6exv.pdb ABCDEFGHIJKLM NT P 0
Biounits:
6exv.pdb1.pdb ABCDEFGHIJKLM NT P 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNA_pol_Rpb1_1 Domain I3LJR4_15-354 2.7e-106 1 No_clan A 15 354 NPT  H-Bb 
RNA_pol_Rpb1_5 Domain I3LJR4_811-1399 1.6e-94 1 No_clan A 830 1427 NT  L-Bb 
RNA_pol_Rpb1_2 Domain I3LJR4_356-493 2.2e-74 1 No_clan A 356 521 PT   
RNA_pol_Rpb1_6 Domain I3LJR4_877-1060 1.6e-68 1 No_clan A 896 1079   
RNA_pol_Rpb1_7 Domain I3LJR4_1145-1279 8.2e-53 1 No_clan A 1164 1299   
RNA_pol_Rpb1_3 Domain I3LJR4_508-673 1.2e-49 1 No_clan A 524 692   
RNA_pol_Rpb1_4 Domain I3LJR4_697-804 6.4e-38 1 No_clan A 716 823   
RNA_pol_Rpb2_6 Domain I3LGP4_784-1157 7.8e-124 1 CL0410 B 707 1080 PT   
RNA_pol_Rpb2_2 Domain I3LGP4_278-471 9.1e-56 1 No_clan B 201 394   
RNA_pol_Rpb2_7 Domain I3LGP4_1159-1251 6.1e-34 1 No_clan B 1082 1174 T   
RNA_pol_Rpb2_4 Domain I3LGP4_644-706 2.7e-24 1 No_clan B 567 629   
RNA_pol_Rpb2_3 Domain I3LGP4_545-609 1e-23 1 No_clan B 468 532 T   
RNA_pol_Rpb2_5 Domain I3LGP4_730-777 2.2e-16 1 No_clan B 653 700   
RNA_pol_A_bac Domain I3LCH3_50-177 1.4e-40 1 No_clan C 50 177   
RNA_pol_L Domain I3LCH3_20-256 2.8e-17 1 CL0509 C 20 256   
RNA_pol_Rpb5_C Domain I3LSI7_137-209 2.8e-34 1 No_clan E 137 209   
RNA_pol_Rpb5_N Domain I3LSI7_4-94 1.3e-33 1 CL0236 E 4 94   
S1 Domain I3LJZ9_78-161 1e-20 1 CL0021 G 78 161   
SHS2_Rpb7-N Domain I3LJZ9_8-64 2.7e-10 1 CL0319 G 8 64   
RNA_POL_M_15KD Domain P60899_14-51 3.7e-17 1 CL0167 I 14 51   
TFIIS_C Domain P60899_84-124 7.7e-12 1 CL0167 I 84 124   
RNA_pol_N Domain 3.6e-32 1 No_clan J 2 59
RNA_pol_L_2 Domain F1RKE4_30-104 3.2e-29 1 CL0509 K 30 104   
DNA_RNApol_7kD Domain I3LN51_17-48 7.2e-18 1 CL0167 L 17 48   
RNA_pol_Rpb2_1 Family I3LGP4_115-519 3.7e-65 1 No_clan B 38 442   
RNA_pol_Rpb4 Family A0A287ADR4_73-180 1.1e-25 1 CL0426 D 31 138   
RNA_pol_Rpb6 Family F1SKN8_51-104 2.1e-13 1 No_clan F 51 104   
RNA_pol_Rpb8 Family I3LCB2_7-147 5.6e-54 1 CL0021 H 7 147   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
I=1-125 C nucleolus
I=1-125 C nucleus
I=1-125 C RNA polymerase II, core complex
I=1-125 F DNA-directed 5'-3' RNA polymerase activity
I=1-125 F nucleic acid binding
I=1-125 F zinc ion binding
I=1-125 P maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter
I=1-125 P mRNA cleavage
I=1-125 P transcription by RNA polymerase II
I=1-125 P transcription initiation from RNA polymerase II promoter
I=1-125 P transcription-coupled nucleotide-excision repair
M=1-8 F toxin activity
Sequences
Download file with secondary structure created by Stride  
6exv.pdb1.pdb:   [ download sequences in FASTA format ]
N (dna): 
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T (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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P (rna): 
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