General information
PDB ID 6FM4
Title THE CRYSTAL STRUCTURE OF S. AUREUS GYRASE COMPLEX WITH ID-130 AND DNA
PDB header ISOMERASE
Date 2018-01-30
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.7
Kind dna
Organism STAPHYLOCOCCUS AUREUS (STRAIN N315), SYNTHETIC CONSTRUCT
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6fm4.pdb BD EF 0
Biounits:
6fm4.pdb1.pdb BD EF 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DNA_topoisoIV Family Q99XG5_33-474 3.2e-156 1 No_clan B 1033 1474 EF  H-Bb S-Bb S-Mj S-Mn L-Bb 
DNA_gyraseB_C Family P66937_580-634 6.6e-27 1 No_clan B 544 634 F  H-Bb 
Toprim Family P66937_430-542 8.5e-17 1 CL0413 B 430 542 EF  H-Bb L-Bb L-Mn 
DNA_topoisoIV Family Q99XG5_33-474 3.2e-156 1 No_clan D 1033 1474 EF  H-Bb S-Bb S-Mj S-Mn L-Bb 
DNA_gyraseB_C Family P66937_580-634 6.5e-27 1 No_clan D 544 634 E  H-Bb 
Toprim Family P66937_430-542 8.5e-17 1 CL0413 D 430 542 EF  H-Bb L-Bb L-Mn 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
B/D=2-491 C chromosome
B/D=2-491 C cytoplasm
B/D=2-491 F ATP binding
B/D=2-491 F DNA binding
B/D=2-491 F DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
B/D=2-491 P DNA topological change
B/D=2-491 P DNA-dependent DNA replication
B/D=2-491 P response to antibiotic
B/D=409-543, B/D=580-644 C chromosome
B/D=409-543, B/D=580-644 C cytoplasm
B/D=409-543, B/D=580-644 F ATP binding
B/D=409-543, B/D=580-644 F DNA binding
B/D=409-543, B/D=580-644 F DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
B/D=409-543, B/D=580-644 F metal ion binding
B/D=409-543, B/D=580-644 P DNA topological change
B/D=409-543, B/D=580-644 P DNA-dependent DNA replication
Sequences
Download file with secondary structure created by Stride  
6fm4.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
Click "SHOW" for view sequence
F (dna): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
D (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2021

text