General information
PDB ID 6FQ5
Title CLASS 1 : CANONICAL NUCLEOSOME
PDB header GENE REGULATION
Date 2018-02-13
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.8
Kind dna
Organism XENOPUS LAEVIS, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6fq5.pdb ABCDEFGH IJ 0
Biounits:
6fq5.pdb1.pdb ABCDEFGH IJ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Histone Domain P84233_37-132 3.8e-46 1 CL0012 A 37 131 IJ   
CENP-T_C Domain P62799_18-99 5e-08 1 CL0012 B 24 98 J   
Histone Domain P06897_13-91 3.4e-16 1 CL0012 C 9 90 IJ   
Histone Domain P02281_33-102 4.2e-22 1 CL0012 D 27 98 IJ   
Histone Domain P84233_37-132 7.9e-46 1 CL0012 E 38 131 IJ   
CENP-T_C Domain P62799_18-99 5.2e-08 1 CL0012 F 24 98 IJ   
Histone Domain P06897_13-91 3.4e-16 1 CL0012 G 9 90 IJ   
Histone Domain P02281_33-102 4.2e-22 1 CL0012 H 27 98 IJ   
Histone_H2A_C Family P06897_92-120 3.3e-17 1 No_clan C 91 118   
Histone_H2A_C Family P06897_92-120 3.3e-17 1 No_clan G 91 118   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/E=38-135 C nucleoplasm
A/E=38-135 C nucleosome
A/E=38-135 F DNA binding
A/E=38-135 F protein heterodimerization activity
B=19-102, F=19-103 C host cell nucleus
B=19-102, F=19-103 C nucleosome
B=19-102, F=19-103 C nucleus
B=19-102, F=19-103 F DNA binding
B=19-102, F=19-103 F protein heterodimerization activity
B=19-102, F=19-103 P DNA-templated transcription, initiation
C/G=10-119 C nucleosome
C/G=10-119 C nucleus
C/G=10-119 F DNA binding
C/G=10-119 F protein heterodimerization activity
D/H=31-125 C nucleosome
D/H=31-125 C nucleus
D/H=31-125 F DNA binding
D/H=31-125 F protein heterodimerization activity
Sequences
Download file with secondary structure created by Stride  
6fq5.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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