General information
PDB ID 6G0L
Title STRUCTURE OF TWO MOLECULES OF THE CHROMATIN REMODELLING ENZYME CHD1 BOUND TO A NUCLEOSOME
PDB header MOTOR PROTEIN
Date 2018-03-19
Experimental method ELECTRON MICROSCOPY
Resolution (A) 10
Kind dna
Organism XENOPUS LAEVIS, SYNTHETIC CONSTRUCT, SACCHAROMYCES CEREVISIAE S288C
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6g0l.pdb ABCDEFGHMW IJ 0
Biounits:
6g0l.pdb1.pdb ABCDEFGHMW IJ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Histone Domain Q92133_39-132 5.8e-45 1 CL0012 A 38 131 IJ   
CENP-T_C Domain P62799_18-99 4.9e-08 1 CL0012 B 25 98 IJ   
Histone Domain P06897_19-91 1.2e-15 1 CL0012 C 16 90 I   
Histone Domain A0A1L8G0X3_33-102 7.2e-22 1 CL0012 D 28 98 IJ   
Histone Domain Q92133_39-132 1.4e-44 1 CL0012 E 39 131 IJ   
CENP-T_C Domain P62799_18-99 6e-08 1 CL0012 F 17 98 IJ   
Histone Domain P06897_19-91 8.9e-16 1 CL0012 G 14 90 IJ   
Histone Domain A0A1L8G0X3_33-102 1.1e-21 1 CL0012 H 29 98 J   
SNF2-rel_dom Domain P32657_379-665 1.8e-61 1 CL0023 M 379 689 IJ   
Cdh1_DBD_1 Domain P32657_1010-1129 2.3e-45 1 CL0123 M 1010 1129 IJ   
Helicase_C Domain P32657_695-809 1.4e-19 1 CL0023 M 695 809 I   
Chromo Domain P32657_285-341 7.9e-15 1 CL0049 M 285 341   
Chromo Domain P32657_178-248 8.3e-07 1 CL0049 M 178 248 J   
Myb_DNA-binding Domain P32657_794-823 4.1e-05 0 CL0123 M 1172 1201   
SNF2-rel_dom Domain P32657_379-665 2.4e-65 1 CL0023 W 379 665 I   
Cdh1_DBD_1 Domain P32657_1010-1129 2.3e-45 1 CL0123 W 1009 1128 IJ   
Helicase_C Domain P32657_695-809 1.5e-19 1 CL0023 W 695 809   
Chromo Domain P32657_285-341 8.2e-15 1 CL0049 W 285 341   
Chromo Domain P32657_178-248 8.6e-07 1 CL0049 W 178 248   
Myb_DNA-binding Domain P32657_814-843 4.2e-05 0 CL0123 W 1171 1200   
Histone_H2A_C Family P06897_92-120 8.8e-15 1 No_clan C 91 118   
Histone_H2A_C Family P06897_92-120 3e-17 1 No_clan G 91 118   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
B/F=1-103 C host cell nucleus
B/F=1-103 C nucleosome
B/F=1-103 C nucleus
B/F=1-103 F DNA binding
B/F=1-103 F protein heterodimerization activity
B/F=1-103 P DNA-templated transcription, initiation
C/G=1-130 C nucleosome
C/G=1-130 C nucleus
C/G=1-130 F DNA binding
C/G=1-130 F protein heterodimerization activity
M/W=1-1468 C mitochondrion
M/W=1-1468 C nuclear chromatin
M/W=1-1468 C nucleolar chromatin
M/W=1-1468 C SAGA complex
M/W=1-1468 C SLIK (SAGA-like) complex
M/W=1-1468 F ATP binding
M/W=1-1468 F chromatin DNA binding
M/W=1-1468 F DNA binding
M/W=1-1468 F DNA-dependent ATPase activity
M/W=1-1468 F helicase activity
M/W=1-1468 F methylated histone binding
M/W=1-1468 F nucleosome-dependent ATPase activity
M/W=1-1468 F rDNA binding
M/W=1-1468 F transcription regulatory region sequence-specific DNA binding
M/W=1-1468 P ATP-dependent chromatin remodeling
M/W=1-1468 P histone H2B conserved C-terminal lysine ubiquitination
M/W=1-1468 P negative regulation of DNA-dependent DNA replication
M/W=1-1468 P negative regulation of histone exchange
M/W=1-1468 P negative regulation of histone H3-K14 acetylation
M/W=1-1468 P negative regulation of histone H3-K9 acetylation
M/W=1-1468 P nucleosome mobilization
M/W=1-1468 P nucleosome organization
M/W=1-1468 P nucleosome positioning
M/W=1-1468 P regulation of chromatin organization
M/W=1-1468 P regulation of nucleosome density
M/W=1-1468 P regulation of transcriptional start site selection at RNA polymerase II promoter
M/W=1-1468 P sister chromatid cohesion
M/W=1-1468 P termination of RNA polymerase I transcription
M/W=1-1468 P termination of RNA polymerase II transcription
M/W=1-1468 P transcription elongation from RNA polymerase II promoter
Sequences
Download file with secondary structure created by Stride  
6g0l.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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M (protein): 
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W (protein): 
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