General information
PDB ID 6GFW
Title CRYO-EM STRUCTURE OF BACTERIAL RNA POLYMERASE-SIGMA54 HOLOENZYME INITIAL TRANSCRIBING COMPLEX
PDB header TRANSCRIPTION
Date 2018-05-02
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.7
Kind hybrid
Organism ESCHERICHIA COLI K-12, KLEBSIELLA PNEUMONIAE
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6gfw.pdb ABCDEM FG R 0
Biounits:
6gfw.pdb1.pdb ABCDEM FG R 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNA_pol_A_bac Domain P0A7Z4_58-186 9.1e-24 1 No_clan A 58 185   
RNA_pol_L Domain P0A7Z4_29-228 1.2e-22 1 CL0509 A 29 228   
RNA_pol_A_bac Domain P0A7Z4_58-186 9.3e-24 1 No_clan B 58 185   
RNA_pol_L Domain P0A7Z4_29-228 1.3e-22 1 CL0509 B 29 228   
RNA_pol_Rpb2_6 Domain P0A8V2_717-1264 3.3e-160 1 CL0410 C 717 1264   
RNA_pol_Rpb2_3 Domain P0A8V2_513-581 1.7e-29 1 No_clan C 513 581   
RNA_pol_Rpb2_45 Domain P0A8V2_591-656 2.1e-27 1 No_clan C 591 656   
RNA_pol_Rpb2_7 Domain P0A8V2_1266-1342 4.5e-27 1 No_clan C 1266 1341   
RNA_pol_Rpb2_2 Domain P0A8V2_329-454 6.1e-15 1 No_clan C 329 454   
RNA_pol_Rpb2_2 Domain P0A8V2_151-276 2.7e-07 1 No_clan C 151 276 G   
RNA_pol_Rpb1_1 Domain P0A8T7_15-342 7.7e-90 1 No_clan D 14 342 F   
RNA_pol_Rpb1_5 Domain P0A8T7_766-1317 5.2e-78 1 No_clan D 766 1317   
RNA_pol_Rpb1_2 Domain P0A8T7_386-486 4.2e-27 1 No_clan D 386 486   
RNA_pol_Rpb1_3 Domain P0A8T7_489-644 5.1e-27 1 No_clan D 489 644   
RNA_pol_Rpb1_4 Domain P0A8T7_673-764 1.5e-18 1 No_clan D 673 764   
RNA_pol_Rpb1_2 Domain P0A8T7_344-401 1.3e-07 1 No_clan D 344 401   
Sigma54_DBD Domain P06223_316-473 9.5e-56 1 CL0123 M 316 473 F   
Sigma54_CBD Domain P06223_112-303 1.6e-40 1 CL0123 M 112 263   
RNA_pol_Rpb2_1 Family P0A8V2_26-500 2.6e-58 1 No_clan C 26 500 G   
RNA_pol_Rpb6 Family P0A800_8-60 3.4e-17 1 No_clan E 8 60   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=1-329 C cytoplasm
A/B=1-329 C cytosol
A/B=1-329 C membrane
A/B=1-329 F DNA binding
A/B=1-329 F DNA-directed 5'-3' RNA polymerase activity
A/B=1-329 F protein dimerization activity
A/B=1-329 P transcription, DNA-templated
C=1-1342 C cytoplasm
C=1-1342 C cytosol
C=1-1342 C membrane
C=1-1342 F DNA binding
C=1-1342 F DNA-directed 5'-3' RNA polymerase activity
C=1-1342 F ribonucleoside binding
C=1-1342 P response to antibiotic
C=1-1342 P transcription, DNA-templated
D=1-1407 C cytoplasm
D=1-1407 C cytosol
D=1-1407 C membrane
D=1-1407 F DNA binding
D=1-1407 F DNA-directed 5'-3' RNA polymerase activity
D=1-1407 F magnesium ion binding
D=1-1407 F zinc ion binding
D=1-1407 P response to antibiotic
D=1-1407 P transcription, DNA-templated
E=1-91 C cytosol
E=1-91 C RNA polymerase complex
E=1-91 F DNA binding
E=1-91 F DNA-directed 5'-3' RNA polymerase activity
E=1-91 P protein-containing complex assembly
E=1-91 P transcription, DNA-templated
M=1-477 F DNA binding
M=1-477 F DNA-binding transcription activator activity
M=1-477 F DNA-directed 5'-3' RNA polymerase activity
M=1-477 F sigma factor activity
M=1-477 P DNA-templated transcription, initiation
M=1-477 P nitrogen fixation
Sequences
Download file with secondary structure created by Stride  
6gfw.pdb1.pdb:   [ download sequences in FASTA format ]
F (dna): 
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G (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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M (protein): 
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R (rna): 
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