General information
PDB ID 6GIS
Title STRUCTURAL BASIS OF HUMAN CLAMP SLIDING ON DNA
PDB header DNA BINDING PROTEIN
Date 2018-05-15
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.82
Kind dna
Organism HOMO SAPIENS, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6gis.pdb ABC DE 0
Biounits:
6gis.pdb1.pdb ABC DE 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
PCNA_N Domain P12004_2-125 3.6e-60 1 CL0060 A 1 125 D  H-Bb 
PCNA_C Domain P12004_127-254 5.4e-57 1 CL0060 A 127 254 D  H-Bb 
PCNA_N Domain P12004_2-125 3.7e-60 1 CL0060 B 1 125   
PCNA_C Domain P12004_127-254 9.8e-58 1 CL0060 B 127 254   
PCNA_N Domain P12004_2-125 3.6e-60 1 CL0060 C 1 125 D  H-Bb 
PCNA_C Domain P12004_127-254 2e-55 1 CL0060 C 127 253   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B/C=1-261 C centrosome
A/B/C=1-261 C chromatin
A/B/C=1-261 C cyclin-dependent protein kinase holoenzyme complex
A/B/C=1-261 C extracellular exosome
A/B/C=1-261 C nuclear body
A/B/C=1-261 C nuclear chromosome, telomeric region
A/B/C=1-261 C nuclear lamina
A/B/C=1-261 C nuclear replication fork
A/B/C=1-261 C nucleoplasm
A/B/C=1-261 C nucleus
A/B/C=1-261 C PCNA complex
A/B/C=1-261 C PCNA-p21 complex
A/B/C=1-261 C replication fork
A/B/C=1-261 C replisome
A/B/C=1-261 F chromatin binding
A/B/C=1-261 F damaged DNA binding
A/B/C=1-261 F dinucleotide insertion or deletion binding
A/B/C=1-261 F DNA polymerase binding
A/B/C=1-261 F DNA polymerase processivity factor activity
A/B/C=1-261 F enzyme binding
A/B/C=1-261 F estrogen receptor binding
A/B/C=1-261 F histone acetyltransferase binding
A/B/C=1-261 F identical protein binding
A/B/C=1-261 F MutLalpha complex binding
A/B/C=1-261 F protein C-terminus binding
A/B/C=1-261 F protein-containing complex binding
A/B/C=1-261 F purine-specific mismatch base pair DNA N-glycosylase activity
A/B/C=1-261 F receptor tyrosine kinase binding
A/B/C=1-261 P base-excision repair, gap-filling
A/B/C=1-261 P cellular response to hydrogen peroxide
A/B/C=1-261 P cellular response to UV
A/B/C=1-261 P cellular response to xenobiotic stimulus
A/B/C=1-261 P DNA damage response, detection of DNA damage
A/B/C=1-261 P DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
A/B/C=1-261 P epithelial cell differentiation
A/B/C=1-261 P error-free translesion synthesis
A/B/C=1-261 P error-prone translesion synthesis
A/B/C=1-261 P estrous cycle
A/B/C=1-261 P heart development
A/B/C=1-261 P leading strand elongation
A/B/C=1-261 P liver regeneration
A/B/C=1-261 P mismatch repair
A/B/C=1-261 P mitotic telomere maintenance via semi-conservative replication
A/B/C=1-261 P negative regulation of transcription by RNA polymerase II
A/B/C=1-261 P nucleotide-excision repair, DNA gap filling
A/B/C=1-261 P nucleotide-excision repair, DNA incision
A/B/C=1-261 P nucleotide-excision repair, DNA incision, 5'-to lesion
A/B/C=1-261 P positive regulation of deoxyribonuclease activity
A/B/C=1-261 P positive regulation of DNA repair
A/B/C=1-261 P positive regulation of DNA replication
A/B/C=1-261 P positive regulation of DNA-directed DNA polymerase activity
A/B/C=1-261 P protein ubiquitination
A/B/C=1-261 P regulation of transcription involved in G1/S transition of mitotic cell cycle
A/B/C=1-261 P replication fork processing
A/B/C=1-261 P response to cadmium ion
A/B/C=1-261 P response to dexamethasone
A/B/C=1-261 P response to estradiol
A/B/C=1-261 P response to L-glutamate
A/B/C=1-261 P telomere maintenance
A/B/C=1-261 P telomere maintenance via semi-conservative replication
A/B/C=1-261 P transcription-coupled nucleotide-excision repair
A/B/C=1-261 P translesion synthesis
A/B/C=1-261 P viral process
Sequences
Download file with secondary structure created by Stride  
6gis.pdb1.pdb:   [ download sequences in FASTA format ]
D (dna): 
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E (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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