General information
PDB ID 6GOV
Title STRUCTURE OF THE RNA POLYMERASE LAMBDA-BASED ANTITERMINATION COMPLEX
PDB header TRANSCRIPTION
Date 2018-06-04
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.7
Kind hybrid
Organism ESCHERICHIA COLI O157:H7, ESCHERICHIA PHAGE LAMBDA, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6gov.pdb ABEGNUVWXY KL R 0
Biounits:
6gov.pdb1.pdb ABEGNUVWXY KL R 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
NusA_N Domain P0AFF8_4-124 6.6e-37 1 No_clan A 4 124   
KH_5 Domain P0AFF8_230-298 1.1e-27 1 CL0007 A 230 298 R   
S1 Domain P0AFF8_131-197 0.00014 1 CL0021 A 131 197   
NusB Domain P0A782_7-132 8.7e-35 1 CL0633 B 7 132 R   
Ribosomal_S10 Domain P0A7R7_7-101 3.5e-29 1 No_clan E 7 101 R   
NusG Domain P0AFG1_7-112 8.9e-27 1 CL0439 G 7 112   
RNA_pol_A_bac Domain P0A7Z6_58-186 9.2e-24 1 No_clan U 58 178   
RNA_pol_L Domain P0A7Z6_29-228 1.2e-22 1 CL0509 U 29 228   
RNA_pol_A_bac Domain P0A7Z6_58-186 7.6e-24 1 No_clan V 58 186   
RNA_pol_L Domain P0A7Z6_29-228 1.1e-22 1 CL0509 V 29 228   
RNA_pol_Rpb2_6 Domain P0A8V4_717-1264 3.3e-160 1 CL0410 X 717 1264   
RNA_pol_Rpb2_3 Domain P0A8V4_513-581 1.7e-29 1 No_clan X 513 581 L   
RNA_pol_Rpb2_45 Domain P0A8V4_591-656 2.1e-27 1 No_clan X 591 656   
RNA_pol_Rpb2_7 Domain P0A8V4_1266-1341 4.5e-27 1 No_clan X 1266 1341 L   
RNA_pol_Rpb2_2 Domain P0A8V4_329-454 6.1e-15 1 No_clan X 329 454   
RNA_pol_Rpb2_2 Domain P0A8V4_151-276 2.7e-07 1 No_clan X 151 276   
RNA_pol_Rpb1_1 Domain P0A8T8_15-342 7.6e-90 1 No_clan Y 14 342   
RNA_pol_Rpb1_5 Domain P0A8T8_766-1317 1.2e-68 1 No_clan Y 766 1317 L   
RNA_pol_Rpb1_2 Domain P0A8T8_386-486 4.2e-27 1 No_clan Y 386 486 L   
RNA_pol_Rpb1_3 Domain P0A8T8_489-644 5e-27 1 No_clan Y 489 644   
RNA_pol_Rpb1_4 Domain P0A8T8_673-764 1.5e-18 1 No_clan Y 673 764   
RNA_pol_Rpb1_2 Domain P0A8T8_344-401 1.3e-07 1 No_clan Y 344 401   
KOW Family P0AFG1_130-165 9.2e-08 1 CL0107 G 130 165   
N36 Family P03045_2-36 3e-26 1 No_clan N 2 36 R   
RNA_pol_Rpb6 Family P0A802_8-60 6e-17 1 No_clan W 8 60   
RNA_pol_Rpb2_1 Family P0A8V4_26-500 2.6e-58 1 No_clan X 26 500   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
N=1-107 F bacterial-type RNA polymerase core enzyme binding
N=1-107 F DNA binding
N=1-107 F RNA stem-loop binding
N=1-107 F transcription antitermination factor activity, RNA binding
N=1-107 P DNA-templated transcription, termination
N=1-107 P transcription antitermination
Sequences
Download file with secondary structure created by Stride  
6gov.pdb1.pdb:   [ download sequences in FASTA format ]
K (dna): 
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L (dna): 
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A (protein): 
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B (protein): 
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E (protein): 
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G (protein): 
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N (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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X (protein): 
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Y (protein): 
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R (rna): 
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