General information
PDB ID 6GYS
Title CRYO-EM STRUCTURE OF THE CBF3-CEN3 COMPLEX OF THE BUDDING YEAST KINETOCHORE
PDB header DNA BINDING PROTEIN
Date 2018-07-01
Experimental method ELECTRON MICROSCOPY
Resolution (A) 4.4
Kind dna
Organism SACCHAROMYCES CEREVISIAE
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6gys.pdb ABCDEHIJKL FG 0
Biounits:
6gys.pdb1.pdb ABCDEHIJKL FG 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Zn_clus Domain P40969_12-51 2.2e-08 1 No_clan B 12 51   
Zn_clus Domain P40969_12-51 2.5e-08 1 No_clan C 12 54 FG  L-Bb L-Mj 
Skp1 Domain P52286_144-191 2.2e-25 1 No_clan D 144 191   
Skp1_POZ Domain P52286_4-59 3e-13 1 CL0033 D 4 99   
NDC10_II Domain P32504_185-496 1.1e-116 1 CL0382 E 185 496 FG  H-Bb L-Bb 
Zn_clus Domain P40969_12-51 2.2e-08 1 No_clan I 12 51   
Zn_clus Domain P40969_12-51 2.4e-08 1 No_clan J 12 54 G  L-Bb L-Mj 
Skp1 Domain P52286_144-191 2.2e-25 1 No_clan K 144 191   
Skp1_POZ Domain P52286_4-59 3e-13 1 CL0033 K 4 99   
NDC10_II Domain P32504_185-496 1.1e-116 1 CL0382 L 185 496 FG  H-Bb L-Bb 
Cep3 Family P40969_101-607 1.2e-196 1 CL0507 B 101 607   
Cep3 Family P40969_101-607 2.6e-198 1 CL0507 C 101 607 FG  H-Bb H-Mj L-Bb 
Cep3 Family P40969_101-607 1.2e-196 1 CL0507 I 101 607   
Cep3 Family P40969_101-607 2.4e-95 1 CL0507 J 101 341   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/H=1-478 C CBF3 complex
A/H=1-478 C nucleus
A/H=1-478 F DNA binding, bending
A/H=1-478 P kinetochore assembly
A/H=1-478 P septin ring assembly
B/C/I/J=1-608 C CBF3 complex
B/C/I/J=1-608 C condensed nuclear chromosome kinetochore
B/C/I/J=1-608 C host cell nucleus
B/C/I/J=1-608 C nucleus
B/C/I/J=1-608 F centromeric DNA binding
B/C/I/J=1-608 F DNA binding, bending
B/C/I/J=1-608 F DNA-binding transcription factor activity, RNA polymerase II-specific
B/C/I/J=1-608 F identical protein binding
B/C/I/J=1-608 F zinc ion binding
B/C/I/J=1-608 P mitotic spindle assembly checkpoint
B/C/I/J=1-608 P septin ring assembly
D/K=1-194 C CBF3 complex
D/K=1-194 C condensed chromosome kinetochore
D/K=1-194 C cytoplasm
D/K=1-194 C kinetochore
D/K=1-194 C nucleus
D/K=1-194 C RAVE complex
D/K=1-194 C SCF ubiquitin ligase complex
D/K=1-194 F cullin family protein binding
D/K=1-194 F DNA replication origin binding
D/K=1-194 P cellular protein-containing complex assembly
D/K=1-194 P exit from mitosis
D/K=1-194 P G1/S transition of mitotic cell cycle
D/K=1-194 P G2/M transition of mitotic cell cycle
D/K=1-194 P kinetochore assembly
D/K=1-194 P mitotic cell cycle
D/K=1-194 P negative regulation of cytoplasmic translation
D/K=1-194 P protein neddylation
D/K=1-194 P protein ubiquitination
D/K=1-194 P regulation of exit from mitosis
D/K=1-194 P regulation of protein-containing complex assembly
D/K=1-194 P SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
D/K=1-194 P septin ring assembly
D/K=1-194 P ubiquitin-dependent protein catabolic process
D/K=1-194 P vacuolar acidification
E/L=1-956 C CBF3 complex
E/L=1-956 C condensed nuclear chromosome, centromeric region
E/L=1-956 C cytoplasm
E/L=1-956 C nucleus
E/L=1-956 C spindle
E/L=1-956 C spindle midzone
E/L=1-956 C spindle pole body
E/L=1-956 F centromeric DNA binding
E/L=1-956 F DNA binding, bending
E/L=1-956 P chromosome segregation
E/L=1-956 P mitotic spindle elongation
E/L=1-956 P septin ring assembly
Sequences
Download file with secondary structure created by Stride  
6gys.pdb1.pdb:   [ download sequences in FASTA format ]
F (dna): 
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G (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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