General information
PDB ID 6IID
Title HUMAN EXOG-H140A IN COMPLEX WITH RNA-DNA CHIMERIC DUPLEX
PDB header HYDROLASE/DNA
Date 2018-10-04
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.99
Kind hybrid
Organism HOMO SAPIENS, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6iid.pdb ABCD EFGHIJKL EGIK 0
Biounits:
6iid.pdb1.pdb AB EFGH EG 1
6iid.pdb2.pdb CD IJKL IK 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Endonuclease_NS Domain Q9Y2C4_60-287 4.9e-57 1 CL0263 A 58 287 EF  H-Bb H-Mj S-Bb L-Bb L-Mj 
Exog_C Domain Q9Y2C4_302-350 1.1e-27 1 No_clan A 302 350 EF  H-Bb L-Bb 
Endonuclease_NS Domain Q9Y2C4_60-287 4.6e-57 1 CL0263 B 58 287 GH   
Exog_C Domain Q9Y2C4_302-350 4e-19 1 No_clan B 302 350 GH   
Endonuclease_NS Domain Q9Y2C4_60-287 5.5e-57 1 CL0263 C 59 287 IJ  H-Bb S-Bb L-Bb 
Exog_C Domain Q9Y2C4_302-350 1e-26 1 No_clan C 302 349 JI  H-Bb 
Endonuclease_NS Domain Q9Y2C4_60-287 4.5e-57 1 CL0263 D 58 287 KL   
Exog_C Domain Q9Y2C4_302-350 5.8e-19 1 No_clan D 302 350 KL   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B/C/D=42-368 C mitochondrial inner membrane
A/B/C/D=42-368 C mitochondrion
A/B/C/D=42-368 C nucleus
A/B/C/D=42-368 C protein-containing complex
A/B/C/D=42-368 F 5'-3' exonuclease activity
A/B/C/D=42-368 F endonuclease activity
A/B/C/D=42-368 F endoribonuclease activity
A/B/C/D=42-368 F metal ion binding
A/B/C/D=42-368 F nuclease activity
A/B/C/D=42-368 F nucleic acid binding
A/B/C/D=42-368 F single-stranded DNA endodeoxyribonuclease activity
A/B/C/D=42-368 P apoptotic DNA fragmentation
A/B/C/D=42-368 P DNA catabolic process, endonucleolytic
Sequences
Download file with secondary structure created by Stride  
6iid.pdb1.pdb:   [ download sequences in FASTA format ]
F (dna): 
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H (dna): 
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E (hybrid): 
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G (hybrid): 
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A (protein): 
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B (protein): 
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6iid.pdb2.pdb:   [ download sequences in FASTA format ]
J (dna): 
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L (dna): 
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I (hybrid): 
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K (hybrid): 
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C (protein): 
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D (protein): 
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