General information
PDB ID 6IRO
Title THE CROSSLINKED COMPLEX OF ISWI-NUCLEOSOME IN THE ADP-BOUND STATE
PDB header DNA BINDING PROTEIN/DNA
Date 2018-11-13
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.4
Kind dna
Organism XENOPUS LAEVIS, ESCHERICHIA COLI K-12
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6iro.pdb LABCDEFGH IJ 0
Biounits:
6iro.pdb1.pdb LABCDEFGH IJ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Histone Domain P84233_37-132 3.8e-46 1 CL0012 A 37 131 IJ  H-Bb S-Bb L-Bb L-Mn 
CENP-T_C Domain P62799_18-99 5.1e-08 1 CL0012 B 19 98 IJ  H-Bb S-Bb L-Bb 
Histone Domain P06897_13-91 5.9e-16 1 CL0012 C 12 90 IJ  H-Bb S-Bb L-Bb 
Histone Domain P02281_33-102 1.1e-21 1 CL0012 D 29 98 IJ  H-Bb L-Bb L-Mn 
Histone Domain P84233_37-132 8.2e-45 1 CL0012 E 40 131 IJ  H-Bb S-Bb L-Bb L-Mn 
CENP-T_C Domain P62799_18-99 5.2e-08 1 CL0012 F 23 98 IJ  H-Bb L-Bb 
Histone Domain P06897_13-91 5.9e-16 1 CL0012 G 12 90 IJ  H-Bb S-Bb L-Bb 
Histone Domain P02281_33-102 1.1e-21 1 CL0012 H 29 98 IJ  H-Bb S-Bb L-Bb 
SNF2-rel_dom Domain P38144_199-482 3.1e-79 1 CL0023 L 199 482 IJ  H-Bb L-Bb 
Helicase_C Domain P38144_502-616 9.8e-20 1 CL0023 L 502 616 IJ  H-Bb S-Bb L-Bb 
Histone_H2A_C Family P06897_92-120 3.1e-17 1 No_clan C 91 118   
Histone_H2A_C Family P06897_92-120 3.1e-17 1 No_clan G 91 118   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/E=2-136 C nucleoplasm
A/E=2-136 C nucleosome
A/E=2-136 F DNA binding
A/E=2-136 F protein heterodimerization activity
B/F=2-103 C host cell nucleus
B/F=2-103 C nucleosome
B/F=2-103 C nucleus
B/F=2-103 F DNA binding
B/F=2-103 F protein heterodimerization activity
B/F=2-103 P DNA-templated transcription, initiation
C/G=2-130 C nucleosome
C/G=2-130 C nucleus
C/G=2-130 F DNA binding
C/G=2-130 F protein heterodimerization activity
D/H=5-126 C nucleosome
D/H=5-126 C nucleus
D/H=5-126 F DNA binding
D/H=5-126 F protein heterodimerization activity
L=69-1129 C Isw1a complex
L=69-1129 C Isw1b complex
L=69-1129 C nucleolar chromatin
L=69-1129 C nucleus
L=69-1129 F ATP binding
L=69-1129 F DNA binding
L=69-1129 F DNA-dependent ATPase activity
L=69-1129 F helicase activity
L=69-1129 F nucleosome binding
L=69-1129 F rDNA binding
L=69-1129 F transcription regulatory region sequence-specific DNA binding
L=69-1129 P ATP-dependent chromatin remodeling
L=69-1129 P chromatin remodeling
L=69-1129 P DNA-templated transcription, elongation
L=69-1129 P heterochromatin maintenance
L=69-1129 P negative regulation of histone exchange
L=69-1129 P nucleosome positioning
L=69-1129 P positive regulation of transcription by RNA polymerase II
L=69-1129 P regulation of chromatin organization
L=69-1129 P regulation of nucleosome density
L=69-1129 P regulation of transcriptional start site selection at RNA polymerase II promoter
L=69-1129 P sister chromatid cohesion
L=69-1129 P termination of RNA polymerase I transcription
L=69-1129 P termination of RNA polymerase II transcription
Sequences
Download file with secondary structure created by Stride  
6iro.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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L (protein): 
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