General information
PDB ID 6J5B
Title STRUCTURAL BASIS FOR THE TARGET DNA RECOGNITION AND BINDING BY THE MYB DOMAIN OF PHOSPHATE STARVATION RESPONSE REGULATOR 1
PDB header TRANSCRIPTION/DNA
Date 2019-01-10
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.7
Kind dna
Organism ARABIDOPSIS THALIANA, SYNTHETIC CONSTRUCT
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6j5b.pdb ACDFHJ BEGIKU 0
Biounits:
6j5b.pdb1.pdb AD BU 1
6j5b.pdb2.pdb CF EG 1
6j5b.pdb3.pdb HJ IK 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Myb_DNA-binding Domain Q94CL7_227-278 8.3e-10 1 CL0123 A 227 278 BU  H-Bb H-Mj L-Bb 
Myb_DNA-binding Domain Q94CL7_227-278 9.4e-10 1 CL0123 C 227 278 EG  H-Bb H-Mj L-Bb L-Mn 
Myb_DNA-binding Domain Q94CL7_227-278 8.3e-10 1 CL0123 D 227 278 BU  H-Bb H-Mj L-Bb 
Myb_DNA-binding Domain Q94CL7_227-278 8.8e-10 1 CL0123 F 227 278 EG  H-Bb H-Mj L-Bb 
Myb_DNA-binding Domain Q94CL7_227-278 8.8e-10 1 CL0123 H 227 278 IK  H-Bb H-Mj L-Bb L-Mn 
Myb_DNA-binding Domain Q94CL7_227-278 8.8e-10 1 CL0123 J 227 278 IK  H-Bb H-Mj L-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/C/D/F/H/J=224-283 C nucleus
A/C/D/F/H/J=224-283 F DNA binding
A/C/D/F/H/J=224-283 F DNA-binding transcription factor activity
A/C/D/F/H/J=224-283 P cellular response to high light intensity
A/C/D/F/H/J=224-283 P cellular response to phosphate starvation
A/C/D/F/H/J=224-283 P circadian rhythm
A/C/D/F/H/J=224-283 P regulation of transcription, DNA-templated
A/C/D/F/H/J=224-283 P sulfate ion homeostasis
Sequences
Download file with secondary structure created by Stride  
6j5b.pdb1.pdb:   [ download sequences in FASTA format ]
B (dna): 
Click "SHOW" for view sequence
U (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
D (protein): 
Click "SHOW" for view sequence
6j5b.pdb2.pdb:   [ download sequences in FASTA format ]
E (dna): 
Click "SHOW" for view sequence
G (dna): 
Click "SHOW" for view sequence
C (protein): 
Click "SHOW" for view sequence
F (protein): 
Click "SHOW" for view sequence
6j5b.pdb3.pdb:   [ download sequences in FASTA format ]
I (dna): 
Click "SHOW" for view sequence
K (dna): 
Click "SHOW" for view sequence
H (protein): 
Click "SHOW" for view sequence
J (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2021

text