General information
PDB ID 6KW3
Title THE CLASSA RSC-NUCLEOSOME COMPLEX
PDB header DNA BINDING PROTEIN/DNA
Date 2019-09-05
Experimental method ELECTRON MICROSCOPY
Resolution (A) 7.13
Kind dna
Organism XENOPUS LAEVIS, HOMO SAPIENS
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6kw3.pdb BNOQRSWfhFHDMIGAJECKXLTPgY UV 0
Biounits:
6kw3.pdb1.pdb BNOQRSWfhFHDMIGAJECKXLTPgY UV 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Bromodomain Domain Q07979_29-122 7.1e-07 1 No_clan A 26 122   
CENP-T_C Domain P62799_18-99 4.7e-08 1 CL0012 B 25 98 UV  H-Bb H-Mj S-Bb L-Bb 
SWIRM Domain P43609_83-168 3.2e-29 1 CL0123 D 83 168   
Myb_DNA-binding Domain P43609_312-358 1.3e-09 1 CL0123 D 312 358   
SWIRM Domain P43609_83-168 5e-29 1 CL0123 H 83 168   
ZZ Domain P43609_254-298 1.3e-17 1 CL0006 H 254 298   
Myb_DNA-binding Domain P43609_312-358 1.9e-09 1 CL0123 H 312 358   
SWIB Domain P25632_70-144 2.1e-07 1 No_clan I 230 343   
Histone Domain P84233_37-132 1.6e-46 1 CL0012 N 37 131 UV  H-Bb H-Mj S-Bb L-Bb L-Mn 
Histone Domain P06897_13-91 5.9e-16 1 CL0012 O 12 90 U  H-Bb S-Bb 
Histone Domain P02281_33-102 1.8e-21 1 CL0012 P 32 101 UV  H-Bb L-Bb 
Histone Domain P84233_37-132 3.2e-45 1 CL0012 Q 40 131 UV  H-Bb H-Mj S-Bb L-Bb L-Mn 
CENP-T_C Domain P62799_18-99 5.1e-08 1 CL0012 R 19 98 UV  H-Bb H-Mj S-Bb L-Bb 
Histone Domain P06897_13-91 5.9e-16 1 CL0012 S 12 90 UV  H-Bb S-Bb L-Bb 
Histone Domain P02281_33-102 1.8e-21 1 CL0012 T 32 101 UV  H-Bb S-Bb L-Bb 
HSA Domain P32597_314-382 2e-12 1 CL0023 W 314 382   
SNF2-rel_dom Domain P32597_473-769 2e-76 1 CL0023 Y 473 769 UV  H-Bb H-Mn L-Bb 
Helicase_C Domain P32597_791-905 9.3e-21 1 CL0023 Y 791 905 U  H-Bb L-Bb L-Mj 
SWIRM-assoc_1 Family P43609_415-486 2.9e-07 1 No_clan D 396 486   
Actin Family Q12406_2-466 6.8e-55 1 CL0108 f 2 464   
SNF5 Family Q06168_198-278 7e-19 1 No_clan G 198 277   
SNF5 Family Q06168_271-383 4.4e-18 1 No_clan G 270 383   
Actin Family Q05123_18-375 3.8e-14 1 CL0108 g 18 288   
SWIRM-assoc_1 Family P43609_406-486 3.9e-08 1 No_clan H 406 486   
Rtt102p Family P53330_5-90 3.8e-06 1 No_clan h 33 90   
Histone_H2A_C Family P06897_92-120 3.1e-17 1 No_clan O 91 118   
Histone_H2A_C Family P06897_92-120 3.1e-17 1 No_clan S 91 118   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A=1-502 C nucleus
A=1-502 C RSC-type complex
A=1-502 F sequence-specific DNA binding
A=1-502 P ATP-dependent chromatin remodeling
A=1-502 P chromatin remodeling
A=1-502 P nucleosome disassembly
A=1-502 P regulation of transcription by RNA polymerase II
A=1-502 P transcription elongation from RNA polymerase II promoter
B/R=1-103 C host cell nucleus
B/R=1-103 C nucleosome
B/R=1-103 C nucleus
B/R=1-103 F DNA binding
B/R=1-103 F protein heterodimerization activity
B/R=1-103 P DNA-templated transcription, initiation
C=1-883 C host cell nucleus
C=1-883 C RSC-type complex
C=1-883 F DNA binding
C=1-883 F DNA-binding transcription factor activity, RNA polymerase II-specific
C=1-883 F zinc ion binding
C=1-883 P double-strand break repair via nonhomologous end joining
C=1-883 P nucleosome disassembly
C=1-883 P regulation of transcription, DNA-templated
C=1-883 P transcription elongation from RNA polymerase II promoter
D/H=1-557 C nucleus
D/H=1-557 C RSC-type complex
D/H=1-557 C SWI/SNF complex
D/H=1-557 F DNA binding
D/H=1-557 F histone binding
D/H=1-557 F zinc ion binding
D/H=1-557 P ATP-dependent chromatin remodeling
D/H=1-557 P double-strand break repair via nonhomologous end joining
D/H=1-557 P nucleosome disassembly
D/H=1-557 P positive regulation of transcription, DNA-templated
D/H=1-557 P regulation of transcription, DNA-templated
D/H=1-557 P transcription elongation from RNA polymerase II promoter
E=1-78 C nucleus
E=1-78 C RSC-type complex
E=1-78 P chromatin remodeling
E=1-78 P G2/M transition of mitotic cell cycle
E=1-78 P nucleosome disassembly
E=1-78 P transcription elongation from RNA polymerase II promoter
F=1-435 C nucleus
F=1-435 C RSC-type complex
F=1-435 P ATP-dependent chromatin remodeling
F=1-435 P nucleosome disassembly
F=1-435 P transcription elongation from RNA polymerase II promoter
f=1-477 C NuA4 histone acetyltransferase complex
f=1-477 C nucleus
f=1-477 C RSC-type complex
f=1-477 C SWI/SNF complex
f=1-477 F chromatin binding
f=1-477 F structural molecule activity
f=1-477 P ATP-dependent chromatin remodeling
f=1-477 P chromatin organization
f=1-477 P histone H4 acetylation
f=1-477 P nucleosome disassembly
f=1-477 P nucleosome mobilization
f=1-477 P positive regulation of transcription by RNA polymerase II
f=1-477 P regulation of transcription by RNA polymerase II
f=1-477 P regulation of transcription, DNA-templated
f=1-477 P transcription elongation from RNA polymerase II promoter
G=1-426 C nucleus
G=1-426 C RSC-type complex
G=1-426 C SWI/SNF complex
G=1-426 P ATP-dependent chromatin remodeling
G=1-426 P chromatin remodeling at centromere
G=1-426 P chromosome segregation
G=1-426 P DNA repair
G=1-426 P double-strand break repair
G=1-426 P G2/M transition of mitotic cell cycle
G=1-426 P nucleosome disassembly
G=1-426 P regulation of nuclear cell cycle DNA replication
G=1-426 P regulation of transcription by RNA polymerase II
G=1-426 P transcription elongation from RNA polymerase II promoter
g=1-467 C nucleus
g=1-467 C RSC-type complex
g=1-467 C SWI/SNF complex
g=1-467 F structural molecule activity
g=1-467 P ATP-dependent chromatin remodeling
g=1-467 P chromatin organization
g=1-467 P nucleosome disassembly
g=1-467 P nucleosome mobilization
g=1-467 P nucleosome positioning
g=1-467 P positive regulation of transcription by RNA polymerase II
g=1-467 P regulation of transcription by RNA polymerase II
g=1-467 P regulation of transcription, DNA-templated
g=1-467 P transcription elongation from RNA polymerase II promoter
h=1-157 C nucleus
h=1-157 C RSC-type complex
h=1-157 C SWI/SNF complex
h=1-157 P chromatin remodeling
h=1-157 P chromosome segregation
h=1-157 P nucleosome disassembly
h=1-157 P transcription elongation from RNA polymerase II promoter
I=1-483 C RSC-type complex
I=1-483 P ATP-dependent chromatin remodeling
I=1-483 P nucleosome disassembly
I=1-483 P nucleosome positioning
I=1-483 P positive regulation of transcription elongation from RNA polymerase II promoter
J/W/Y=1-1359 C chromosome, centromeric region
J/W/Y=1-1359 C nucleus
J/W/Y=1-1359 C RSC-type complex
J/W/Y=1-1359 F ATP binding
J/W/Y=1-1359 F ATPase activity
J/W/Y=1-1359 F DNA binding
J/W/Y=1-1359 F DNA helicase activity
J/W/Y=1-1359 F DNA translocase activity
J/W/Y=1-1359 F DNA-dependent ATPase activity
J/W/Y=1-1359 F helicase activity
J/W/Y=1-1359 F lysine-acetylated histone binding
J/W/Y=1-1359 P ATP-dependent chromatin remodeling
J/W/Y=1-1359 P base-excision repair
J/W/Y=1-1359 P chromatin remodeling at centromere
J/W/Y=1-1359 P chromosome segregation
J/W/Y=1-1359 P cytoskeleton organization
J/W/Y=1-1359 P double-strand break repair
J/W/Y=1-1359 P meiotic cell cycle
J/W/Y=1-1359 P nucleosome disassembly
J/W/Y=1-1359 P nucleosome positioning
J/W/Y=1-1359 P positive regulation of transcription by RNA polymerase II
J/W/Y=1-1359 P regulation of transcription, DNA-templated
J/W/Y=1-1359 P transcription elongation from RNA polymerase II promoter
J/W/Y=1-1359 P transfer RNA gene-mediated silencing
K=1-885 C host cell nucleus
K=1-885 C nucleus
K=1-885 C RSC-type complex
K=1-885 F DNA-binding transcription factor activity, RNA polymerase II-specific
K=1-885 F sequence-specific DNA binding
K=1-885 F zinc ion binding
K=1-885 P ATP-dependent chromatin remodeling
K=1-885 P nucleosome disassembly
K=1-885 P nucleosome positioning
K=1-885 P regulation of nuclear cell cycle DNA replication
K=1-885 P regulation of transcription, DNA-templated
K=1-885 P transcription elongation from RNA polymerase II promoter
L=1-889 C RSC-type complex
L=1-889 F chromatin binding
L=1-889 P ATP-dependent chromatin remodeling
L=1-889 P chromosome segregation
L=1-889 P double-strand break repair via homologous recombination
L=1-889 P double-strand break repair via nonhomologous end joining
L=1-889 P nucleosome disassembly
L=1-889 P plasmid maintenance
L=1-889 P regulation of sporulation resulting in formation of a cellular spore
L=1-889 P sister chromatid cohesion
L=1-889 P sporulation resulting in formation of a cellular spore
L=1-889 P transcription elongation from RNA polymerase II promoter
L=1-889 P UV-damage excision repair
M=1-581 C nucleus
M=1-581 C RSC-type complex
M=1-581 C SWI/SNF complex
M=1-581 F transcription regulatory region sequence-specific DNA binding
M=1-581 P ATP-dependent chromatin remodeling
M=1-581 P cellular response to hydrogen peroxide
M=1-581 P nucleosome disassembly
M=1-581 P regulation of transcription by RNA polymerase II
M=1-581 P regulation of transcription, DNA-templated
M=1-581 P rRNA processing
M=1-581 P rRNA transcription
M=1-581 P transcription elongation from RNA polymerase II promoter
M=1-581 P transfer RNA gene-mediated silencing
N/Q=1-136 C nucleoplasm
N/Q=1-136 C nucleosome
N/Q=1-136 F DNA binding
N/Q=1-136 F protein heterodimerization activity
O/S=1-130 C nucleosome
O/S=1-130 C nucleus
O/S=1-130 F DNA binding
O/S=1-130 F protein heterodimerization activity
P/T=1-126 C nucleosome
P/T=1-126 C nucleus
P/T=1-126 F DNA binding
P/T=1-126 F protein heterodimerization activity
X=1-625 C RSC-type complex
X=1-625 F chromatin binding
X=1-625 F lysine-acetylated histone binding
X=1-625 P ATP-dependent chromatin remodeling
X=1-625 P nucleosome disassembly
X=1-625 P transcription elongation from RNA polymerase II promoter
Sequences
Download file with secondary structure created by Stride  
6kw3.pdb1.pdb:   [ download sequences in FASTA format ]
U (dna): 
Click "SHOW" for view sequence
V (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
C (protein): 
Click "SHOW" for view sequence
D (protein): 
Click "SHOW" for view sequence
E (protein): 
Click "SHOW" for view sequence
F (protein): 
Click "SHOW" for view sequence
g (protein): 
Click "SHOW" for view sequence
h (protein): 
Click "SHOW" for view sequence
I (protein): 
Click "SHOW" for view sequence
J (protein): 
Click "SHOW" for view sequence
K (protein): 
Click "SHOW" for view sequence
L (protein): 
Click "SHOW" for view sequence
M (protein): 
Click "SHOW" for view sequence
N (protein): 
Click "SHOW" for view sequence
O (protein): 
Click "SHOW" for view sequence
P (protein): 
Click "SHOW" for view sequence
Q (protein): 
Click "SHOW" for view sequence
R (protein): 
Click "SHOW" for view sequence
S (protein): 
Click "SHOW" for view sequence
T (protein): 
Click "SHOW" for view sequence
W (protein): 
Click "SHOW" for view sequence
X (protein): 
Click "SHOW" for view sequence
Y (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2021

text