General information
PDB ID 6L8E
Title CRYSTAL STRUCTURE OF HETEROHEXAMERIC YOEB-YEFM COMPLEX BOUND TO 26BP- DNA
PDB header ANTITOXIN/TOXIN/DNA
Date 2019-11-06
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.35
Kind dna
Organism STAPHYLOCOCCUS AUREUS SUBSP. AUREUS NCTC 8325, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6l8e.pdb ABCDEFIJKLMN GHOP 0
Biounits:
6l8e.pdb1.pdb ABCDEF GH 1
6l8e.pdb2.pdb IJKLMN OP 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
PhdYeFM_antitox Domain Q2G285_1-74 8.2e-21 1 CL0136 A 1 74 GH  H-Bb H-Mj S-Bb 
PhdYeFM_antitox Domain Q2G285_1-55 1.8e-14 1 CL0136 B 1 54 GH  H-Bb H-Mj 
PhdYeFM_antitox Domain Q2G285_1-74 8.2e-21 1 CL0136 C 1 74 GH  H-Bb H-Mj S-Bb L-Bb 
PhdYeFM_antitox Domain Q2G285_1-55 1.1e-14 1 CL0136 D 1 55 GH  H-Bb H-Mj S-Bb 
YoeB_toxin Domain Q2G286_8-88 1.3e-38 1 CL0136 E 8 88   
YoeB_toxin Domain Q2G286_8-88 1.3e-38 1 CL0136 F 8 88   
PhdYeFM_antitox Domain Q2G285_1-74 8.2e-21 1 CL0136 I 1 74 OP  H-Bb H-Mj S-Bb L-Bb 
PhdYeFM_antitox Domain Q2G285_1-55 5.8e-16 1 CL0136 J 1 59 OP  H-Bb H-Mj 
PhdYeFM_antitox Domain Q2G285_1-74 8.2e-21 1 CL0136 K 1 74 OP  H-Bb H-Mj 
PhdYeFM_antitox Domain Q2G285_1-55 2.8e-15 1 CL0136 L 1 57 OP  H-Bb H-Mj S-Bb 
YoeB_toxin Domain Q2G286_8-88 1.3e-38 1 CL0136 M 8 88   
YoeB_toxin Domain Q2G286_8-88 1.3e-38 1 CL0136 N 8 88   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
6l8e.pdb1.pdb:   [ download sequences in FASTA format ]
G (dna): 
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H (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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6l8e.pdb2.pdb:   [ download sequences in FASTA format ]
O (dna): 
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P (dna): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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