General information
PDB ID 6N4C
Title EM STRUCTURE OF THE DNA WRAPPING IN BACTERIAL OPEN TRANSCRIPTION INITIATION COMPLEX
PDB header TRANSCRIPTION/DNA
Date 2018-11-19
Experimental method ELECTRON MICROSCOPY
Resolution (A) 17
Kind dna
Organism ESCHERICHIA COLI K-12, ENTEROBACTERIA PHAGE LAMBDA
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6n4c.pdb FCDABE ab 0
Biounits:
6n4c.pdb1.pdb FCDABE ab 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNA_pol_A_CTD Domain P0A7Z4_243-309 7.6e-24 1 CL0198 A 243 309 b  L-Mj 
RNA_pol_A_bac Domain P0A7Z4_58-186 1.8e-23 1 No_clan A 58 186   
RNA_pol_L Domain 3.4e-22 1 CL0509 A 29 228
RNA_pol_A_CTD Domain P0A7Z4_243-309 7.9e-24 1 CL0198 B 243 309 ab  H-Bb H-Mj L-Bb L-Mj 
RNA_pol_A_bac Domain P0A7Z4_58-186 1.7e-23 1 No_clan B 58 186 ab  L-Bb 
RNA_pol_L Domain P0A7Z4_29-228 3.2e-22 1 CL0509 B 29 228 ab  L-Bb 
RNA_pol_Rpb2_6 Domain P0A8V2_717-1264 3.3e-160 1 CL0410 C 717 1264   
RNA_pol_Rpb2_3 Domain P0A8V2_513-581 1.7e-29 1 No_clan C 513 581 b   
RNA_pol_Rpb2_45 Domain P0A8V2_591-656 2.1e-27 1 No_clan C 591 656   
RNA_pol_Rpb2_7 Domain P0A8V2_1266-1342 3.1e-27 1 No_clan C 1266 1342   
RNA_pol_Rpb2_2 Domain P0A8V2_329-454 6.1e-15 1 No_clan C 329 454 a   
RNA_pol_Rpb2_2 Domain P0A8V2_151-276 2.7e-07 1 No_clan C 151 276 ab   
RNA_pol_Rpb1_1 Domain P0A8T7_15-342 1.1e-89 1 No_clan D 15 342 ab  H-Bb H-Mj L-Bb L-Mn 
RNA_pol_Rpb1_5 Domain P0A8T7_766-1317 6e-78 1 No_clan D 766 1317 b   
RNA_pol_Rpb1_2 Domain P0A8T7_386-486 4.2e-27 1 No_clan D 386 486   
RNA_pol_Rpb1_3 Domain P0A8T7_489-644 1.9e-24 1 No_clan D 489 644   
RNA_pol_Rpb1_4 Domain P0A8T7_673-764 1.5e-18 1 No_clan D 673 764   
RNA_pol_Rpb1_2 Domain P0A8T7_344-401 1.3e-07 1 No_clan D 344 401   
Sigma70_ner Domain P00579_137-348 2e-60 1 CL0123 F 137 348   
Sigma70_r2 Domain P00579_379-449 1.4e-21 1 CL0123 F 379 449 ab   
Sigma70_r4 Domain P00579_547-600 4.6e-19 1 CL0123 F 547 600 ab  H-Bb H-Mj L-Mj 
RNA_pol_Rpb2_1 Family P0A8V2_26-500 2.6e-58 1 No_clan C 26 500 ab   
RNA_pol_Rpb6 Family P0A800_8-60 6e-17 1 No_clan E 8 60   
Sigma70_r1_1 Family P00579_8-83 2e-28 1 No_clan F 8 83   
Sigma70_r3 Family P00579_458-535 6.3e-20 1 CL0123 F 458 540 b   
Sigma70_r1_2 Family P00579_96-128 2.5e-12 1 No_clan F 96 128 a   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A=6-321, B=6-315 C cytoplasm
A=6-321, B=6-315 C cytosol
A=6-321, B=6-315 C membrane
A=6-321, B=6-315 F DNA binding
A=6-321, B=6-315 F DNA-directed 5'-3' RNA polymerase activity
A=6-321, B=6-315 F protein dimerization activity
A=6-321, B=6-315 P transcription, DNA-templated
C=2-1342 C cytoplasm
C=2-1342 C cytosol
C=2-1342 C membrane
C=2-1342 F DNA binding
C=2-1342 F DNA-directed 5'-3' RNA polymerase activity
C=2-1342 F ribonucleoside binding
C=2-1342 P response to antibiotic
C=2-1342 P transcription, DNA-templated
D=15-1376 C cytoplasm
D=15-1376 C cytosol
D=15-1376 C membrane
D=15-1376 F DNA binding
D=15-1376 F DNA-directed 5'-3' RNA polymerase activity
D=15-1376 F magnesium ion binding
D=15-1376 F zinc ion binding
D=15-1376 P response to antibiotic
D=15-1376 P transcription, DNA-templated
E=2-91 C cytosol
E=2-91 C RNA polymerase complex
E=2-91 F DNA binding
E=2-91 F DNA-directed 5'-3' RNA polymerase activity
E=2-91 P protein-containing complex assembly
E=2-91 P transcription, DNA-templated
F=8-613 C cytosol
F=8-613 F DNA binding
F=8-613 F DNA-binding transcription factor activity
F=8-613 F sigma factor activity
F=8-613 P response to heat
F=8-613 P transcription initiation from bacterial-type RNA polymerase promoter
Sequences
Download file with secondary structure created by Stride  
6n4c.pdb1.pdb:   [ download sequences in FASTA format ]
a (dna): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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