General information
PDB ID 6N60
Title ESCHERICHIA COLI RNA POLYMERASE SIGMA70-HOLOENZYME BOUND TO UPSTREAM FORK PROMOTER DNA AND MICROCIN J25 (MCCJ25)
PDB header TRANSFERASE/DNA
Date 2018-11-23
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.68
Kind dna
Organism ESCHERICHIA COLI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6n60.pdb ABCDEFM NT 0
Biounits:
6n60.pdb1.pdb ABCDEFM NT 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNA_pol_A_bac Domain P0A7Z4_58-186 9.3e-24 1 No_clan A 58 178   
RNA_pol_L Domain P0A7Z4_29-228 1.2e-22 1 CL0509 A 29 228   
RNA_pol_L Domain P0A7Z4_29-228 1e-22 1 CL0509 B 29 228   
RNA_pol_A_bac Domain P0A7Z4_58-186 2.1e-21 1 No_clan B 56 186   
RNA_pol_Rpb2_6 Domain P0A8V2_717-1264 1.3e-158 1 CL0410 C 717 1264   
RNA_pol_Rpb2_3 Domain P0A8V2_513-581 1.7e-29 1 No_clan C 513 581   
RNA_pol_Rpb2_45 Domain P0A8V2_591-656 2.1e-27 1 No_clan C 591 656   
RNA_pol_Rpb2_7 Domain P0A8V2_1266-1342 3.1e-27 1 No_clan C 1266 1342   
RNA_pol_Rpb2_2 Domain P0A8V2_329-454 6.1e-15 1 No_clan C 329 454   
RNA_pol_Rpb2_2 Domain P0A8V2_151-276 2.7e-07 1 No_clan C 151 276   
RNA_pol_Rpb1_1 Domain P0A8T7_15-342 1.6e-89 1 No_clan D 16 342 N  L-Bb 
RNA_pol_Rpb1_5 Domain P0A8T7_766-1317 2.7e-76 1 No_clan D 766 1317   
RNA_pol_Rpb1_2 Domain P0A8T7_386-486 3.8e-27 1 No_clan D 386 486   
RNA_pol_Rpb1_3 Domain P0A8T7_489-644 4.5e-27 1 No_clan D 489 644   
RNA_pol_Rpb1_4 Domain P0A8T7_673-764 1.3e-18 1 No_clan D 673 764   
RNA_pol_Rpb1_2 Domain P0A8T7_344-401 1.2e-07 1 No_clan D 344 401   
Sigma70_r2 Domain Q0P6L9_379-449 5.8e-22 1 CL0123 F 379 449 N  H-Bb H-Mj 
Sigma70_r4 Domain Q0P6L9_547-600 2.1e-19 1 CL0123 F 547 600   
RNA_pol_Rpb2_1 Family P0A8V2_26-500 7.2e-59 1 No_clan C 26 500   
RNA_pol_Rpb6 Family P0A800_8-60 4.1e-17 1 No_clan E 8 60   
Sigma70_r3 Family Q0P6L9_458-535 4.2e-30 1 CL0123 F 458 535 T  H-Bb 
Sigma70_r1_2 Family Q0P6L9_96-128 1.1e-12 1 No_clan F 96 129 N   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=1-234 C cytoplasm
A/B=1-234 C cytosol
A/B=1-234 C membrane
A/B=1-234 F DNA binding
A/B=1-234 F DNA-directed 5'-3' RNA polymerase activity
A/B=1-234 F protein dimerization activity
A/B=1-234 P transcription, DNA-templated
C=1-1342 C cytoplasm
C=1-1342 C cytosol
C=1-1342 C membrane
C=1-1342 F DNA binding
C=1-1342 F DNA-directed 5'-3' RNA polymerase activity
C=1-1342 F ribonucleoside binding
C=1-1342 P response to antibiotic
C=1-1342 P transcription, DNA-templated
D=2-1407 C cytoplasm
D=2-1407 C cytosol
D=2-1407 C membrane
D=2-1407 F DNA binding
D=2-1407 F DNA-directed 5'-3' RNA polymerase activity
D=2-1407 F magnesium ion binding
D=2-1407 F zinc ion binding
D=2-1407 P response to antibiotic
D=2-1407 P transcription, DNA-templated
E=1-91 C cytosol
E=1-91 C RNA polymerase complex
E=1-91 F DNA binding
E=1-91 F DNA-directed 5'-3' RNA polymerase activity
E=1-91 P protein-containing complex assembly
E=1-91 P transcription, DNA-templated
M=38-58 C extracellular region
M=38-58 P cytolysis
M=38-58 P defense response to bacterium
Sequences
Download file with secondary structure created by Stride  
6n60.pdb1.pdb:   [ download sequences in FASTA format ]
N (dna): 
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T (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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M (protein): 
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