General information
PDB ID 6NE3
Title CRYO-EM STRUCTURE OF SINGLY-BOUND SNF2H-NUCLEOSOME COMPLEX WITH SNF2H BOUND AT SHL-2
PDB header DNA BINDING PROTEIN/DNA
Date 2018-12-16
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.9
Kind dna
Organism XENOPUS LAEVIS, HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6ne3.pdb ABCDEFGHW JI 0
Biounits:
6ne3.pdb1.pdb ABCDEFGHW JI 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Histone Domain P84233_37-132 1.8e-46 1 CL0012 A 36 131 IJ  H-Bb L-Bb L-Mn 
CENP-T_C Domain P62799_18-99 5.3e-08 1 CL0012 B 19 98 IJ  H-Bb L-Bb 
Histone Domain P06897_5-91 3.1e-16 1 CL0012 C 8 90 IJ  H-Bb S-Bb L-Bb 
Histone Domain P02281_28-102 8.4e-23 1 CL0012 D 24 98 IJ  H-Bb S-Bb L-Bb L-Mn 
Histone Domain P84233_37-132 4e-46 1 CL0012 E 37 131 IJ  H-Bb S-Bb L-Bb L-Mn 
CENP-T_C Domain P62799_18-99 4.9e-08 1 CL0012 F 25 98 IJ  H-Bb S-Bb L-Bb 
Histone Domain P06897_13-91 5.1e-16 1 CL0012 G 11 90 IJ  H-Bb S-Bb L-Bb 
Histone Domain P02281_33-102 1.1e-21 1 CL0012 H 29 98 IJ  H-Bb S-Bb L-Bb 
SNF2-rel_dom Domain O60264_183-463 4.3e-82 1 CL0023 W 183 463 IJ  H-Bb L-Bb 
Helicase_C Domain O60264_483-597 1.2e-19 1 CL0023 W 483 597 J  H-Bb S-Bb L-Bb L-Mj 
Histone_H2A_C Family P06897_92-126 4.1e-19 1 No_clan C 91 121   
Histone_H2A_C Family P06897_92-120 4.2e-18 1 No_clan G 91 119   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/E=1-136 C nucleoplasm
A/E=1-136 C nucleosome
A/E=1-136 F DNA binding
A/E=1-136 F protein heterodimerization activity
B/F=1-103 C host cell nucleus
B/F=1-103 C nucleosome
B/F=1-103 C nucleus
B/F=1-103 F DNA binding
B/F=1-103 F protein heterodimerization activity
B/F=1-103 P DNA-templated transcription, initiation
C/G=1-130 C nucleosome
C/G=1-130 C nucleus
C/G=1-130 F DNA binding
C/G=1-130 F protein heterodimerization activity
W=166-634 C chromatin silencing complex
W=166-634 C condensed chromosome
W=166-634 C fibrillar center
W=166-634 C nucleoplasm
W=166-634 C nucleus
W=166-634 C NURF complex
W=166-634 C RSF complex
W=166-634 F ATP binding
W=166-634 F ATPase activity
W=166-634 F DNA binding
W=166-634 F DNA-dependent ATPase activity
W=166-634 F helicase activity
W=166-634 F nucleosome binding
W=166-634 P ATP-dependent chromatin remodeling
W=166-634 P cellular response to leukemia inhibitory factor
W=166-634 P CENP-A containing nucleosome assembly
W=166-634 P chromatin remodeling
W=166-634 P DNA-templated transcription, initiation
W=166-634 P nucleosome assembly
W=166-634 P nucleosome positioning
W=166-634 P positive regulation of gene expression, epigenetic
W=166-634 P positive regulation of transcription by RNA polymerase II
W=166-634 P rDNA heterochromatin assembly
W=166-634 P regulation of transcription by RNA polymerase II
Sequences
Download file with secondary structure created by Stride  
6ne3.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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W (protein): 
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