General information
PDB ID 6NQB
Title ROLE OF ERA IN ASSEMBLY AND HOMEOSTASIS OF THE RIBOSOMAL SMALL SUBUNIT
PDB header RIBOSOME
Date 2019-01-20
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.8
Kind rna
Organism ESCHERICHIA COLI, ESCHERICHIA COLI H736
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6nqb.pdb CJNSDEFHLOPQRTB A 0
Biounits:
6nqb.pdb1.pdb CJNSDEFHLOPQRTB A 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_S3_C Domain P0A7V3_120-202 2e-40 1 No_clan C 119 201 A   
KH_2 Domain P0A7V3_38-111 7.3e-19 1 CL0007 C 37 110   
S4 Domain P0A7V8_96-143 1e-18 1 CL0492 D 95 142 A   
Ribosomal_S5_C Domain P0A7W1_87-157 3.6e-30 1 CL0329 E 86 156 A   
Ribosomal_S5 Domain P0A7W1_11-75 1e-29 1 CL0196 E 10 74 A   
Ribosomal_S6 Domain P02358_3-91 2e-12 1 No_clan F 30 91 A   
Ribosomal_S8 Domain D8A1L7_5-130 3.8e-48 1 No_clan H 4 129 A   
Ribosomal_S10 Domain P0A7R5_7-101 1.9e-33 1 No_clan J 7 101 A   
Ribosomal_S15 Domain P0ADZ4_8-87 2.5e-37 1 CL0600 O 7 87 A   
Ribosomal_S17 Domain P0AG63_10-77 2e-34 1 CL0021 Q 9 76 A   
Ribosomal_S19 Domain F4SQ43_8-81 6.6e-33 1 No_clan S 7 80 A   
Ribosomal_S2 Family P0A7V0_9-224 8.7e-93 1 CL0067 B 9 223 A   
Ribosomal_S4 Family P0A7V8_3-95 1.8e-32 1 CL0492 D 2 94 A   
Ribosom_S12_S23 Family V6FZ95_12-123 5.6e-43 1 CL0021 L 11 122 A   
Ribosomal_S14 Family P0AG59_47-100 1.1e-26 1 No_clan N 46 99 A   
Ribosomal_S16 Family P0A7T3_8-68 9.3e-25 1 No_clan P 8 68 A   
Ribosomal_S18 Family D7ZI16_23-68 3.6e-17 1 CL0123 R 22 67 A   
Ribosomal_S20p Family P0A7U7_3-84 3.7e-27 1 No_clan T 2 83 A   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
B=10-226 C cytosolic small ribosomal subunit
B=10-226 F structural constituent of ribosome
B=10-226 F zinc ion binding
B=10-226 P ribosomal small subunit assembly
B=10-226 P translation
C=2-207 C cytosol
C=2-207 C cytosolic small ribosomal subunit
C=2-207 F mRNA binding
C=2-207 F rRNA binding
C=2-207 F structural constituent of ribosome
C=2-207 P ribosomal small subunit assembly
C=2-207 P translation
D=2-206 C cytosol
D=2-206 C cytosolic small ribosomal subunit
D=2-206 C small ribosomal subunit
D=2-206 F mRNA 5'-UTR binding
D=2-206 F rRNA binding
D=2-206 F structural constituent of ribosome
D=2-206 F translation repressor activity, mRNA regulatory element binding
D=2-206 P DNA-templated transcription, termination
D=2-206 P maintenance of translational fidelity
D=2-206 P negative regulation of translational initiation
D=2-206 P positive regulation of translational fidelity
D=2-206 P response to antibiotic
D=2-206 P ribosomal small subunit assembly
D=2-206 P transcription antitermination
E=10-158 C cytosol
E=10-158 C cytosolic small ribosomal subunit
E=10-158 F rRNA binding
E=10-158 F structural constituent of ribosome
E=10-158 P maintenance of translational fidelity
E=10-158 P response to antibiotic
E=10-158 P ribosomal small subunit assembly
E=10-158 P translation
F=1-93 C cytosol
F=1-93 C cytosolic small ribosomal subunit
F=1-93 F mRNA 5'-UTR binding
F=1-93 F small ribosomal subunit rRNA binding
F=1-93 F structural constituent of ribosome
F=1-93 P translation
J=5-102 C cytosol
J=5-102 C cytosolic small ribosomal subunit
J=5-102 C small ribosomal subunit
J=5-102 F structural constituent of ribosome
J=5-102 F transcription antitermination factor activity, RNA binding
J=5-102 F tRNA binding
J=5-102 P transcription antitermination
J=5-102 P translation
N=2-101 C cytosolic small ribosomal subunit
N=2-101 C small ribosomal subunit
N=2-101 F rRNA binding
N=2-101 F structural constituent of ribosome
N=2-101 P ribosomal small subunit assembly
N=2-101 P translation
O=3-88 C cytosol
O=3-88 C cytosolic small ribosomal subunit
O=3-88 F mRNA binding involved in posttranscriptional gene silencing
O=3-88 F rRNA binding
O=3-88 F small ribosomal subunit rRNA binding
O=3-88 F structural constituent of ribosome
O=3-88 P regulation of translation
O=3-88 P ribosomal small subunit assembly
O=3-88 P translation
P=1-79 C cytosolic small ribosomal subunit
P=1-79 C small ribosomal subunit
P=1-79 F endodeoxyribonuclease activity
P=1-79 F four-way junction DNA binding
P=1-79 F structural constituent of ribosome
P=1-79 P ribosomal small subunit assembly
P=1-79 P translation
Q=4-82 C cytosolic small ribosomal subunit
Q=4-82 F rRNA binding
Q=4-82 F small ribosomal subunit rRNA binding
Q=4-82 F structural constituent of ribosome
Q=4-82 P response to antibiotic
Q=4-82 P ribosomal small subunit assembly
Q=4-82 P translation
T=3-87 C cytosol
T=3-87 C cytosolic small ribosomal subunit
T=3-87 C small ribosomal subunit
T=3-87 F ornithine decarboxylase inhibitor activity
T=3-87 F small ribosomal subunit rRNA binding
T=3-87 F structural constituent of ribosome
T=3-87 P ribosomal small subunit assembly
T=3-87 P translation
Sequences
Download file with secondary structure created by Stride  
6nqb.pdb1.pdb:   [ download sequences in FASTA format ]
B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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H (protein): 
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J (protein): 
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L (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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A (rna): 
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