General information
PDB ID 6NZO
Title SET2 BOUND TO NUCLEOSOME
PDB header GENE REGULATION
Date 2019-02-14
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.8
Kind dna
Organism XENOPUS LAEVIS, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6nzo.pdb ABCDEFGHS IJ 0
Biounits:
6nzo.pdb1.pdb ABCDEFGHS IJ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Histone Domain P02302_39-132 7.6e-46 1 CL0012 A 38 131 IJ  H-Bb H-Mj S-Bb L-Bb 
CENP-T_C Domain P62799_26-99 4.2e-08 1 CL0012 B 26 98 IJ  S-Bb L-Bb 
Histone Domain P06897_21-91 1.5e-15 1 CL0012 C 17 90 IJ  H-Bb S-Bb 
Histone Domain P02281_33-102 2.7e-22 1 CL0012 D 26 98 IJ  H-Bb S-Bb L-Bb L-Mn 
Histone Domain P02302_30-132 1.6e-46 1 CL0012 E 34 131 IJ  H-Bb S-Bb L-Bb 
CENP-T_C Domain P62799_26-99 4.2e-08 1 CL0012 F 26 98 IJ  S-Bb L-Bb 
Histone Domain P06897_21-91 1.5e-15 1 CL0012 G 17 90 IJ  H-Bb S-Bb L-Bb 
Histone Domain P02281_33-102 2.6e-22 1 CL0012 H 26 98 IJ  H-Bb S-Bb L-Bb 
AWS Domain G0S676_137-177 7.1e-13 1 No_clan S 137 177   
Histone_H2A_C Family P06897_92-119 3.8e-18 1 No_clan C 91 119   
Histone_H2A_C Family P06897_92-119 2.9e-17 1 No_clan G 91 118   
SET Family G0S676_191-297 2.3e-18 1 No_clan S 191 297 J  L-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/E=1-136 C nucleosome
A/E=1-136 C nucleus
A/E=1-136 F DNA binding
A/E=1-136 F protein heterodimerization activity
B/F=1-103 C host cell nucleus
B/F=1-103 C nucleosome
B/F=1-103 C nucleus
B/F=1-103 F DNA binding
B/F=1-103 F protein heterodimerization activity
B/F=1-103 P DNA-templated transcription, initiation
C/G=1-75 C cytoplasm
C/G=1-75 C cytosolic large ribosomal subunit
C/G=1-75 C mitochondrion
C/G=1-75 C nucleus
C/G=1-75 F protein tag
C/G=1-75 F structural constituent of ribosome
C/G=1-75 F ubiquitin protein ligase binding
C/G=1-75 P cytoplasmic translation
C/G=1-75 P modification-dependent protein catabolic process
C/G=1-75 P protein ubiquitination
C/G=1-75 P ribosomal large subunit assembly
C/G=1-75 P ribosomal large subunit export from nucleus
C/G=1-75 P ribosome biogenesis
C/G=18-130 C nucleosome
C/G=18-130 C nucleus
C/G=18-130 F DNA binding
C/G=18-130 F protein heterodimerization activity
D/H=5-126 C nucleosome
D/H=5-126 C nucleus
D/H=5-126 F DNA binding
D/H=5-126 F protein heterodimerization activity
Sequences
Download file with secondary structure created by Stride  
6nzo.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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S (protein): 
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