General information
PDB ID 6OD3
Title HUMAN TCF4 C-TERMINAL BHLH DOMAIN IN COMPLEX WITH 13-BP OLIGONUCLEOTIDE CONTAINING E-BOX SEQUENCE
PDB header TRANSCRIPTION/DNA
Date 2019-03-25
Experimental method X-RAY DIFFRACTION
Resolution (A) 1.49
Kind dna
Organism HOMO SAPIENS
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6od3.pdb ABEFGHIJ XWYZ 0
Biounits:
6od3.pdb1.pdb AB XW 1
6od3.pdb2.pdb EF YZ 1
6od3.pdb3.pdb GH 1
6od3.pdb4.pdb IJ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
HLH Domain P15884_566-618 1.4e-13 1 No_clan A 569 622 WX  H-Bb H-Mj 
HLH Domain P15884_566-618 1.3e-13 1 No_clan B 569 622 WX  H-Bb H-Mj L-Bb 
HLH Domain P15884_566-618 1.4e-13 1 No_clan E 569 622 YZ  H-Bb H-Mj 
HLH Domain P15884_566-618 1.3e-13 1 No_clan F 569 622 YZ  H-Bb H-Mj 
HLH Domain P15884_566-618 1.1e-11 1 No_clan G 574 622   
HLH Domain P15884_566-618 1.3e-13 1 No_clan H 569 622   
HLH Domain P15884_566-618 4.1e-13 1 No_clan I 570 622   
HLH Domain P15884_573-618 6.7e-10 1 No_clan J 577 622   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B/E/F/G/H/I/J=565-624 C beta-catenin-TCF complex
A/B/E/F/G/H/I/J=565-624 C beta-catenin-TCF7L2 complex
A/B/E/F/G/H/I/J=565-624 C nuclear chromatin
A/B/E/F/G/H/I/J=565-624 C nucleus
A/B/E/F/G/H/I/J=565-624 C transcription regulator complex
A/B/E/F/G/H/I/J=565-624 F beta-catenin binding
A/B/E/F/G/H/I/J=565-624 F bHLH transcription factor binding
A/B/E/F/G/H/I/J=565-624 F DNA binding
A/B/E/F/G/H/I/J=565-624 F DNA-binding transcription activator activity, RNA polymerase II-specific
A/B/E/F/G/H/I/J=565-624 F DNA-binding transcription factor activity
A/B/E/F/G/H/I/J=565-624 F DNA-binding transcription factor activity, RNA polymerase II-specific
A/B/E/F/G/H/I/J=565-624 F E-box binding
A/B/E/F/G/H/I/J=565-624 F identical protein binding
A/B/E/F/G/H/I/J=565-624 F protein C-terminus binding
A/B/E/F/G/H/I/J=565-624 F protein heterodimerization activity
A/B/E/F/G/H/I/J=565-624 F protein homodimerization activity
A/B/E/F/G/H/I/J=565-624 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
A/B/E/F/G/H/I/J=565-624 F sequence-specific double-stranded DNA binding
A/B/E/F/G/H/I/J=565-624 F TFIIB-class transcription factor binding
A/B/E/F/G/H/I/J=565-624 P positive regulation of neuron differentiation
A/B/E/F/G/H/I/J=565-624 P positive regulation of transcription by RNA polymerase II
A/B/E/F/G/H/I/J=565-624 P positive regulation of transcription, DNA-templated
A/B/E/F/G/H/I/J=565-624 P protein-DNA complex assembly
Sequences
Download file with secondary structure created by Stride  
6od3.pdb1.pdb:   [ download sequences in FASTA format ]
W (dna): 
Click "SHOW" for view sequence
X (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
6od3.pdb2.pdb:   [ download sequences in FASTA format ]
Y (dna): 
Click "SHOW" for view sequence
Z (dna): 
Click "SHOW" for view sequence
E (protein): 
Click "SHOW" for view sequence
F (protein): 
Click "SHOW" for view sequence
6od3.pdb3.pdb:   [ download sequences in FASTA format ]
G (protein): 
Click "SHOW" for view sequence
H (protein): 
Click "SHOW" for view sequence
6od3.pdb4.pdb:   [ download sequences in FASTA format ]
I (protein): 
Click "SHOW" for view sequence
J (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2021

text