General information
PDB ID 6OUL
Title CRYO-EM STRUCTURE OF ESCHERICHIA COLI RNAP POLYMERASE BOUND TO RPSTP2 PROMOTER DNA
PDB header TRANSCRIPTION
Date 2019-05-04
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.4
Kind dna
Organism ESCHERICHIA COLI, ESCHERICHIA COLI K-12
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6oul.pdb GHIJKLR PQ 0
Biounits:
6oul.pdb1.pdb GHIJKLR PQ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNA_pol_A_bac Domain P0A7Z4_58-186 9.3e-24 1 No_clan G 58 178   
RNA_pol_L Domain P0A7Z4_29-228 1.2e-22 1 CL0509 G 29 228   
RNA_pol_A_bac Domain P0A7Z4_58-186 7.5e-24 1 No_clan H 58 186   
RNA_pol_L Domain P0A7Z4_29-228 1e-22 1 CL0509 H 29 228   
RNA_pol_Rpb2_6 Domain P0A8V2_717-1264 3.3e-160 1 CL0410 I 717 1264   
RNA_pol_Rpb2_3 Domain P0A8V2_513-581 1.7e-29 1 No_clan I 513 581 P  L-Bb 
RNA_pol_Rpb2_45 Domain P0A8V2_591-656 2.1e-27 1 No_clan I 591 656   
RNA_pol_Rpb2_7 Domain P0A8V2_1266-1342 3.1e-27 1 No_clan I 1266 1342 Q   
RNA_pol_Rpb2_2 Domain P0A8V2_329-454 6.1e-15 1 No_clan I 329 454 P   
RNA_pol_Rpb2_2 Domain P0A8V2_151-276 2.7e-07 1 No_clan I 151 276   
RNA_pol_Rpb1_1 Domain U9YPW3_16-342 1.8e-89 1 No_clan J 16 342 PQ  H-Bb L-Bb 
RNA_pol_Rpb1_5 Domain U9YPW3_766-1317 7.1e-67 1 No_clan J 766 1317 PQ  L-Bb 
RNA_pol_Rpb1_2 Domain U9YPW3_386-486 4.2e-27 1 No_clan J 386 486   
RNA_pol_Rpb1_3 Domain U9YPW3_489-644 5e-27 1 No_clan J 489 644   
RNA_pol_Rpb1_4 Domain U9YPW3_673-764 1.5e-18 1 No_clan J 673 764   
RNA_pol_Rpb1_2 Domain U9YPW3_344-401 1.3e-07 1 No_clan J 344 401 Q   
Sigma70_ner Domain P00579_137-348 8.6e-45 1 CL0123 L 166 348   
Sigma70_r2 Domain P00579_379-449 1.1e-21 1 CL0123 L 379 449 PQ  H-Bb H-Mj H-Mn L-Bb 
Sigma70_r4 Domain P00579_547-600 3.7e-19 1 CL0123 L 547 600 PQ  H-Bb H-Mj L-Mj 
Sigma70_ner Domain 7.6e-08 1 CL0123 L 137 214
RNA_pol_A_CTD Domain P0A7Z4_250-309 9.7e-25 1 CL0198 R 250 309 Q  L-Bb 
RNA_pol_Rpb2_1 Family P0A8V2_26-500 2.6e-58 1 No_clan I 26 500 P   
RNA_pol_Rpb6 Family P0A800_8-60 4.1e-17 1 No_clan K 8 60   
Sigma70_r3 Family P00579_458-535 8.1e-30 1 CL0123 L 458 535 Q  H-Bb 
Sigma70_r1_2 Family P00579_96-128 1.8e-12 1 No_clan L 96 129 P   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
I=1-1342 C cytoplasm
I=1-1342 C cytosol
I=1-1342 C membrane
I=1-1342 F DNA binding
I=1-1342 F DNA-directed 5'-3' RNA polymerase activity
I=1-1342 F ribonucleoside binding
I=1-1342 P response to antibiotic
I=1-1342 P transcription, DNA-templated
K=1-91 C cytosol
K=1-91 C RNA polymerase complex
K=1-91 F DNA binding
K=1-91 F DNA-directed 5'-3' RNA polymerase activity
K=1-91 P protein-containing complex assembly
K=1-91 P transcription, DNA-templated
Sequences
Download file with secondary structure created by Stride  
6oul.pdb1.pdb:   [ download sequences in FASTA format ]
P (dna): 
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Q (dna): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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R (protein): 
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