General information
PDB ID 6PB6
Title THE E. COLI CLASS-II CAP-DEPENDENT TRANSCRIPTION ACTIVATION COMPLEX AT THE STATE 2
PDB header TRANSCRIPTION/DNA
Date 2019-06-13
Experimental method ELECTRON MICROSCOPY
Resolution (A) 4.29
Kind dna
Organism ESCHERICHIA COLI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6pb6.pdb ABCDEFGH 12 0
Biounits:
6pb6.pdb1.pdb ABCDEFGH 12 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNA_pol_A_bac Domain P0A7Z4_58-186 9.2e-24 1 No_clan A 58 178   
RNA_pol_L Domain P0A7Z4_29-228 1.2e-22 1 CL0509 A 29 228   
RNA_pol_A_bac Domain P0A7Z4_58-186 8.6e-24 1 No_clan B 58 185   
RNA_pol_L Domain P0A7Z4_29-228 1.1e-22 1 CL0509 B 29 228   
RNA_pol_Rpb2_6 Domain B7MIX3_717-1264 3.2e-160 1 CL0410 C 717 1264   
RNA_pol_Rpb2_3 Domain B7MIX3_513-581 1.7e-29 1 No_clan C 513 581 12  L-Bb 
RNA_pol_Rpb2_45 Domain B7MIX3_591-656 2.1e-27 1 No_clan C 591 656   
RNA_pol_Rpb2_7 Domain B7MIX3_1266-1342 3.1e-27 1 No_clan C 1266 1342 2   
RNA_pol_Rpb2_2 Domain B7MIX3_329-454 6.1e-15 1 No_clan C 329 454   
RNA_pol_Rpb2_2 Domain B7MIX3_151-276 2.7e-07 1 No_clan C 151 276 21  L-Bb 
RNA_pol_Rpb1_1 Domain P0A8T8_15-342 1.1e-89 1 No_clan D 15 342 12  H-Bb L-Bb 
RNA_pol_Rpb1_5 Domain P0A8T8_766-1317 1.2e-68 1 No_clan D 766 1317 2  H-Bb 
RNA_pol_Rpb1_2 Domain P0A8T8_386-486 4.2e-27 1 No_clan D 386 486 2   
RNA_pol_Rpb1_3 Domain P0A8T8_489-644 5e-27 1 No_clan D 489 644   
RNA_pol_Rpb1_4 Domain P0A8T8_673-764 1.5e-18 1 No_clan D 673 764   
RNA_pol_Rpb1_2 Domain P0A8T8_344-401 1.3e-07 1 No_clan D 344 401 2   
Sigma70_ner Domain P00579_137-348 1.5e-60 1 CL0123 F 137 348   
Sigma70_r2 Domain P00579_379-449 1.1e-21 1 CL0123 F 379 449 12   
Sigma70_r4 Domain P00579_547-600 3.8e-19 1 CL0123 F 547 600 12  H-Bb L-Bb 
cNMP_binding Domain P0ACK0_21-110 3.2e-24 1 CL0029 G 20 109   
HTH_Crp_2 Domain P0ACK0_142-207 3.1e-13 1 CL0123 G 141 205 2  H-Bb H-Mj L-Bb 
cNMP_binding Domain P0ACK0_21-110 3.2e-24 1 CL0029 H 20 109   
HTH_Crp_2 Domain P0ACK0_142-207 3.1e-13 1 CL0123 H 141 205 12  H-Bb H-Mj L-Bb 
RNA_pol_Rpb2_1 Family B7MIX3_26-500 2.6e-58 1 No_clan C 26 500 12  L-Bb 
RNA_pol_Rpb6 Family P0A800_8-60 4.1e-17 1 No_clan E 8 60   
Sigma70_r3 Family P00579_458-535 8.4e-30 1 CL0123 F 458 535 2   
Sigma70_r1_2 Family P00579_96-128 1.9e-12 1 No_clan F 96 129 1   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=1-329 C cytoplasm
A/B=1-329 C cytosol
A/B=1-329 C membrane
A/B=1-329 F DNA binding
A/B=1-329 F DNA-directed 5'-3' RNA polymerase activity
A/B=1-329 F protein dimerization activity
A/B=1-329 P transcription, DNA-templated
E=1-91 C cytosol
E=1-91 C RNA polymerase complex
E=1-91 F DNA binding
E=1-91 F DNA-directed 5'-3' RNA polymerase activity
E=1-91 P protein-containing complex assembly
E=1-91 P transcription, DNA-templated
F=1-613 C cytosol
F=1-613 F DNA binding
F=1-613 F DNA-binding transcription factor activity
F=1-613 F sigma factor activity
F=1-613 P response to heat
F=1-613 P transcription initiation from bacterial-type RNA polymerase promoter
Sequences
Download file with secondary structure created by Stride  
6pb6.pdb1.pdb:   [ download sequences in FASTA format ]
1 (dna): 
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2 (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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