General information
PDB ID 6PST
Title ESCHERICHIA COLI RNA POLYMERASE PROMOTER UNWINDING INTERMEDIATE (TRPI1.5B) WITH TRAR AND MUTANT RPST P2 PROMOTER
PDB header TRANSCRIPTION/DNA
Date 2019-07-13
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3
Kind dna
Organism ESCHERICHIA COLI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6pst.pdb NMGHIJKL OP 0
Biounits:
6pst.pdb1.pdb NMGHIJKL OP 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNA_pol_A_bac Domain P0A7Z4_58-186 9e-24 1 No_clan G 58 185   
RNA_pol_L Domain P0A7Z4_29-228 1.2e-22 1 CL0509 G 29 228   
RNA_pol_A_bac Domain P0A7Z4_58-186 7.4e-24 1 No_clan H 58 186   
RNA_pol_L Domain P0A7Z4_29-228 1e-22 1 CL0509 H 29 228   
RNA_pol_Rpb2_6 Domain P0A8V2_717-1264 3.2e-160 1 CL0410 I 717 1264   
RNA_pol_Rpb2_3 Domain P0A8V2_513-581 1.7e-29 1 No_clan I 513 581   
RNA_pol_Rpb2_45 Domain P0A8V2_591-656 2.1e-27 1 No_clan I 591 656   
RNA_pol_Rpb2_7 Domain P0A8V2_1266-1342 3.1e-27 1 No_clan I 1266 1342   
RNA_pol_Rpb2_2 Domain P0A8V2_329-454 6.1e-15 1 No_clan I 329 454 O  L-Bb 
RNA_pol_Rpb2_2 Domain P0A8V2_151-276 4.7e-07 1 No_clan I 151 247   
RNA_pol_Rpb1_1 Domain P0A8T7_15-342 1.4e-89 1 No_clan J 16 342   
RNA_pol_Rpb1_5 Domain P0A8T7_753-933 3.3e-46 1 No_clan J 766 1142   
RNA_pol_Rpb1_2 Domain P0A8T7_386-486 3.5e-27 1 No_clan J 386 486   
RNA_pol_Rpb1_3 Domain P0A8T7_489-644 4.1e-27 1 No_clan J 489 644   
RNA_pol_Rpb1_5 Domain P0A8T7_929-1108 8.3e-19 1 No_clan J 1138 1317   
RNA_pol_Rpb1_4 Domain P0A8T7_673-764 1.2e-18 1 No_clan J 673 764   
RNA_pol_Rpb1_2 Domain P0A8T7_344-401 1.1e-07 1 No_clan J 344 401   
Sigma70_ner Domain P00579_137-348 2.2e-46 1 CL0123 L 167 348   
Sigma70_r2 Domain P00579_379-449 1.4e-21 1 CL0123 L 379 449 OP  H-Bb H-Mj H-Mn 
Sigma70_r4 Domain P00579_547-600 4.6e-19 1 CL0123 L 547 600 OP  H-Bb H-Mj L-Bb L-Mj 
Sigma70_ner Domain 7.2e-09 1 CL0123 L 137 213
RNA_pol_A_CTD Domain P0A7Z4_250-309 9.7e-25 1 CL0198 M 250 309 OP  H-Bb L-Bb 
RNA_pol_Rpb2_1 Family P0A8V2_26-500 2.6e-58 1 No_clan I 26 500 OP  H-Bb L-Bb 
RNA_pol_Rpb6 Family P0A800_8-60 3.1e-17 1 No_clan K 8 60   
Sigma70_r3 Family P00579_458-535 1e-29 1 CL0123 L 458 535 P   
Sigma70_r1_1 Family P00579_8-83 8.1e-29 1 No_clan L 7 83   
Sigma70_r1_2 Family P00579_96-128 2.5e-12 1 No_clan L 96 128 O   
zf-dskA_traR Family P41065_31-67 9.6e-14 1 CL0167 N 31 67   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
G/H/M=1-329 C cytoplasm
G/H/M=1-329 C cytosol
G/H/M=1-329 C membrane
G/H/M=1-329 F DNA binding
G/H/M=1-329 F DNA-directed 5'-3' RNA polymerase activity
G/H/M=1-329 F protein dimerization activity
G/H/M=1-329 P transcription, DNA-templated
I=1-1342 C cytoplasm
I=1-1342 C cytosol
I=1-1342 C membrane
I=1-1342 F DNA binding
I=1-1342 F DNA-directed 5'-3' RNA polymerase activity
I=1-1342 F ribonucleoside binding
I=1-1342 P response to antibiotic
I=1-1342 P transcription, DNA-templated
J=2-1407 C cytoplasm
J=2-1407 C cytosol
J=2-1407 C membrane
J=2-1407 F DNA binding
J=2-1407 F DNA-directed 5'-3' RNA polymerase activity
J=2-1407 F magnesium ion binding
J=2-1407 F zinc ion binding
J=2-1407 P response to antibiotic
J=2-1407 P transcription, DNA-templated
K=1-91 C cytosol
K=1-91 C RNA polymerase complex
K=1-91 F DNA binding
K=1-91 F DNA-directed 5'-3' RNA polymerase activity
K=1-91 P protein-containing complex assembly
K=1-91 P transcription, DNA-templated
N=2-73 F zinc ion binding
Sequences
Download file with secondary structure created by Stride  
6pst.pdb1.pdb:   [ download sequences in FASTA format ]
O (dna): 
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P (dna): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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