General information
PDB ID 6PWX
Title CRYO-EM STRUCTURE OF RBBP5 BOUND TO THE NUCLEOSOME
PDB header HISTONE BINDING/DNA BINDING/DNA
Date 2019-07-23
Experimental method ELECTRON MICROSCOPY
Resolution (A) 4.2
Kind dna
Organism HOMO SAPIENS, XENOPUS LAEVIS, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6pwx.pdb AGHIJKMNL OP 0
Biounits:
6pwx.pdb1.pdb AGHIJKMNL OP 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Histone Domain P84233_39-132 3.8e-46 1 CL0012 G 37 131 OP  H-Bb H-Mj S-Bb L-Bb 
CENP-T_C Domain P62799_21-99 4.7e-08 1 CL0012 H 25 98 OP  S-Bb L-Bb 
Histone Domain P06897_13-91 5.9e-16 1 CL0012 I 12 90 OP  H-Bb S-Bb L-Bb 
Histone Domain P02281_33-102 1.1e-21 1 CL0012 J 29 98 PO  H-Bb S-Bb L-Bb 
Histone Domain P84233_39-132 3.8e-46 1 CL0012 K 37 131 OP  H-Bb H-Mj S-Bb L-Bb L-Mn 
CENP-T_C Domain P62799_21-99 4.7e-08 1 CL0012 L 25 98 OP  S-Bb L-Bb 
Histone Domain P06897_13-91 5.9e-16 1 CL0012 M 12 90 OP  H-Bb S-Bb L-Bb 
Histone Domain P02281_33-102 1.1e-21 1 CL0012 N 29 98 OP  H-Bb S-Bb L-Bb 
Histone_H2A_C Family P06897_92-119 3.1e-17 1 No_clan I 91 118   
Histone_H2A_C Family P06897_92-119 3.1e-17 1 No_clan M 91 118   
WD40 Repeat Q15291_58-94 0.00019 1 CL0186 A 58 94   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A=2-538 C histone methyltransferase complex
A=2-538 C MLL1 complex
A=2-538 C MLL3/4 complex
A=2-538 C nucleolus
A=2-538 C nucleoplasm
A=2-538 C nucleus
A=2-538 C Set1C/COMPASS complex
A=2-538 F methylated histone binding
A=2-538 F transcription regulatory region sequence-specific DNA binding
A=2-538 P beta-catenin-TCF complex assembly
A=2-538 P cellular response to DNA damage stimulus
A=2-538 P histone H3-K4 methylation
A=2-538 P post-translational protein modification
A=2-538 P regulation of megakaryocyte differentiation
A=2-538 P response to estrogen
G/K=1-136 C nucleoplasm
G/K=1-136 C nucleosome
G/K=1-136 F DNA binding
G/K=1-136 F protein heterodimerization activity
H/L=1-103 C host cell nucleus
H/L=1-103 C nucleosome
H/L=1-103 C nucleus
H/L=1-103 F DNA binding
H/L=1-103 F protein heterodimerization activity
H/L=1-103 P DNA-templated transcription, initiation
I/M=2-130 C nucleosome
I/M=2-130 C nucleus
I/M=2-130 F DNA binding
I/M=2-130 F protein heterodimerization activity
J/N=5-126 C nucleosome
J/N=5-126 C nucleus
J/N=5-126 F DNA binding
J/N=5-126 F protein heterodimerization activity
Sequences
Download file with secondary structure created by Stride  
6pwx.pdb1.pdb:   [ download sequences in FASTA format ]
O (dna): 
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P (dna): 
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A (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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