General information
PDB ID 6QXF
Title CAS1-CAS2-CSN2-DNA COMPLEX FROM THE TYPE II-A CRISPR-CAS SYSTEM
PDB header DNA BINDING PROTEIN
Date 2019-03-07
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.6
Kind dna
Organism STREPTOCOCCUS THERMOPHILUS, ESCHERICHIA COLI BL21(DE3)
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6qxf.pdb ABCDEFGHIJKLMNOPQRST XY 0
Biounits:
6qxf.pdb1.pdb ABCDEFGHIJKLMNOPQRST XY 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Cas_Csn2 Family G3ECR4_37-212 2e-55 1 CL0023 A 37 212   
Cas_Csn2 Family G3ECR4_37-212 2.1e-55 1 CL0023 B 37 212 X  L-Bb 
Cas_Csn2 Family G3ECR4_37-212 2e-55 1 CL0023 C 37 212   
Cas_Csn2 Family G3ECR4_37-212 2.1e-55 1 CL0023 D 37 212 XY  H-Bb L-Bb 
Cas_Csn2 Family G3ECR4_37-212 2e-55 1 CL0023 E 37 212   
Cas_Csn2 Family G3ECR4_37-212 2.1e-55 1 CL0023 F 37 212 Y  H-Bb 
Cas_Csn2 Family G3ECR4_37-212 2e-55 1 CL0023 G 37 212   
Cas_Csn2 Family G3ECR4_37-212 2.1e-55 1 CL0023 H 37 212 Y  L-Bb 
Cas_Cas1 Family G3ECR2_6-278 3.4e-23 1 No_clan I 6 278   
Cas_Cas1 Family G3ECR2_6-278 3.4e-23 1 No_clan J 6 278   
Cas_Cas1 Family G3ECR2_6-278 3.4e-23 1 No_clan L 6 278   
Cas_Cas1 Family G3ECR2_6-278 3.4e-23 1 No_clan M 6 278   
Cas_Cas1 Family G3ECR2_6-278 3.4e-23 1 No_clan O 6 278   
Cas_Cas1 Family G3ECR2_6-278 3.4e-23 1 No_clan P 6 278   
Cas_Cas1 Family G3ECR2_6-278 3.4e-23 1 No_clan R 6 278   
Cas_Cas1 Family G3ECR2_6-278 3.4e-23 1 No_clan S 6 278   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B/C/D/E/F/G/H=1-219 F DNA binding
A/B/C/D/E/F/G/H=1-219 F metal ion binding
A/B/C/D/E/F/G/H=1-219 P defense response to virus
I/J/L/M/O/P/R/S=1-289 F DNA binding
I/J/L/M/O/P/R/S=1-289 F endodeoxyribonuclease activity
I/J/L/M/O/P/R/S=1-289 F metal ion binding
I/J/L/M/O/P/R/S=1-289 P defense response to virus
I/J/L/M/O/P/R/S=1-289 P maintenance of CRISPR repeat elements
K/N/Q/T=1-114 F endoribonuclease activity
K/N/Q/T=1-114 F metal ion binding
K/N/Q/T=1-114 P defense response to virus
K/N/Q/T=1-114 P maintenance of CRISPR repeat elements
Sequences
Download file with secondary structure created by Stride  
6qxf.pdb1.pdb:   [ download sequences in FASTA format ]
X (dna): 
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Y (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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