General information
PDB ID 6R8Z
Title CRYO-EM STRUCTURE OF NCP_THF2(-1)-UV-DDB
PDB header DNA BINDING PROTEIN
Date 2019-04-02
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.9
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6r8z.pdb ABCDEFGHKL IJ 0
Biounits:
6r8z.pdb1.pdb ABCDEFGHKL IJ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Histone Domain P68431_39-132 1.4e-47 1 CL0012 A 36 132 IJ  H-Bb H-Mj S-Bb L-Bb 
CENP-T_C Domain P62805_19-99 5.2e-08 1 CL0012 B 24 99 JI  H-Bb S-Bb L-Bb 
Histone Domain P04908_10-91 1.8e-16 1 CL0012 C 10 91 IJ  H-Bb S-Bb L-Bb 
Histone Domain P06899_33-102 1.2e-22 1 CL0012 D 30 102 IJ  H-Bb S-Bb L-Bb 
Histone Domain P68431_39-132 1.4e-47 1 CL0012 E 36 132 IJ  H-Bb S-Bb L-Bb 
CENP-T_C Domain P62805_26-99 4.7e-08 1 CL0012 F 26 99 IJ  H-Bb S-Bb L-Bb 
Histone Domain P04908_10-91 1.8e-16 1 CL0012 G 10 91 IJ  H-Bb S-Bb L-Bb 
Histone Domain P06899_33-102 1.2e-22 1 CL0012 H 30 102 IJ  H-Bb H-Mj S-Bb L-Bb 
MMS1_N Domain Q16531_75-392 2.9e-73 1 No_clan K 75 724   
Histone_H2A_C Family P04908_92-126 4e-20 1 No_clan C 92 126 I  L-Mj L-Mn 
Histone_H2A_C Family P04908_92-126 4e-20 1 No_clan G 92 126 J  L-Mj 
CPSF_A Repeat Q16531_788-1099 4.4e-86 1 CL0186 K 788 1099   
WD40 Repeat Q92466_232-271 6.3e-06 1 CL0186 L 232 271   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/E=1-136 C extracellular exosome
A/E=1-136 C extracellular region
A/E=1-136 C membrane
A/E=1-136 C nuclear chromosome
A/E=1-136 C nuclear nucleosome