General information
PDB ID 6RI7
Title CRYO-EM STRUCTURE OF E. COLI RNA POLYMERASE ELONGATION COMPLEX BOUND TO GREB TRANSCRIPTION FACTOR
PDB header TRANSCRIPTION
Date 2019-04-23
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.9
Kind hybrid
Organism ESCHERICHIA COLI, ESCHERICHIA COLI (STRAIN K12)
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6ri7.pdb FABCDEG NT R 0
Biounits:
6ri7.pdb1.pdb FABCDEG NT R 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNA_pol_A_bac Domain P0A7Z4_58-186 8.6e-24 1 No_clan A 58 185   
RNA_pol_L Domain P0A7Z4_29-228 1.1e-22 1 CL0509 A 29 228   
RNA_pol_A_bac Domain P0A7Z4_58-186 8.5e-24 1 No_clan B 58 186   
RNA_pol_L Domain P0A7Z4_29-228 1.2e-22 1 CL0509 B 29 228   
RNA_pol_Rpb2_6 Domain P0A8V2_717-1264 4.6e-145 1 CL0410 C 717 1264 RT   
RNA_pol_Rpb2_3 Domain P0A8V2_513-581 1.7e-29 1 No_clan C 513 581 R   
RNA_pol_Rpb2_45 Domain P0A8V2_591-656 2.1e-27 1 No_clan C 591 656   
RNA_pol_Rpb2_7 Domain P0A8V2_1266-1342 3e-27 1 No_clan C 1266 1342 T   
RNA_pol_Rpb2_2 Domain P0A8V2_329-454 6e-15 1 No_clan C 329 454   
RNA_pol_Rpb2_2 Domain P0A8V2_151-276 2.6e-07 1 No_clan C 151 276   
RNA_pol_Rpb1_1 Domain P0A8T7_15-342 1.8e-89 1 No_clan D 16 342 NRT  H-Bb L-Bb 
RNA_pol_Rpb1_5 Domain P0A8T7_766-1317 6e-78 1 No_clan D 766 1317 NT  L-Bb 
RNA_pol_Rpb1_2 Domain P0A8T7_386-486 4.2e-27 1 No_clan D 386 486 R   
RNA_pol_Rpb1_3 Domain P0A8T7_489-644 5.1e-27 1 No_clan D 489 644   
RNA_pol_Rpb1_4 Domain P0A8T7_673-764 1.5e-18 1 No_clan D 673 764   
RNA_pol_Rpb1_2 Domain P0A8T7_344-401 1.3e-07 1 No_clan D 344 401 T   
GreA_GreB_N Domain P30128_4-74 1.3e-26 1 No_clan F 4 74   
GreA_GreB Domain P30128_80-155 2e-22 1 CL0487 F 80 155   
GreA_GreB_N Domain P30128_4-74 1.3e-26 1 No_clan G 4 74   
GreA_GreB Domain P30128_80-155 2e-22 1 CL0487 G 80 155   
RNA_pol_Rpb2_1 Family P0A8V2_26-500 2.5e-58 1 No_clan C 26 500 T  H-Bb 
RNA_pol_Rpb6 Family P0A800_8-60 3.2e-17 1 No_clan E 8 60   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=1-329 C cytoplasm
A/B=1-329 C cytosol
A/B=1-329 C membrane
A/B=1-329 F DNA binding
A/B=1-329 F DNA-directed 5'-3' RNA polymerase activity
A/B=1-329 F protein dimerization activity
A/B=1-329 P transcription, DNA-templated
C=1-1342 C cytoplasm
C=1-1342 C cytosol
C=1-1342 C membrane
C=1-1342 F DNA binding
C=1-1342 F DNA-directed 5'-3' RNA polymerase activity
C=1-1342 F ribonucleoside binding
C=1-1342 P response to antibiotic
C=1-1342 P transcription, DNA-templated
D=1-1407 C cytoplasm
D=1-1407 C cytosol
D=1-1407 C membrane
D=1-1407 F DNA binding
D=1-1407 F DNA-directed 5'-3' RNA polymerase activity
D=1-1407 F magnesium ion binding
D=1-1407 F zinc ion binding
D=1-1407 P response to antibiotic
D=1-1407 P transcription, DNA-templated
E=1-91 C cytosol
E=1-91 C RNA polymerase complex
E=1-91 F DNA binding
E=1-91 F DNA-directed 5'-3' RNA polymerase activity
E=1-91 P protein-containing complex assembly
E=1-91 P transcription, DNA-templated
F/G=1-158 F DNA binding
F/G=1-158 F RNA polymerase binding
F/G=1-158 P DNA-templated transcription, elongation
F/G=1-158 P DNA-templated transcription, initiation
F/G=1-158 P positive regulation of mRNA cleavage
F/G=1-158 P regulation of DNA-templated transcription, elongation
Sequences
Download file with secondary structure created by Stride  
6ri7.pdb1.pdb:   [ download sequences in FASTA format ]
N (dna): 
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T (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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R (rna): 
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