General information
PDB ID 6RKV
Title E. COLI DNA GYRASE - DNA BINDING AND CLEAVAGE DOMAIN IN STATE 2
PDB header ISOMERASE
Date 2019-04-30
Experimental method ELECTRON MICROSCOPY
Resolution (A) 4.6
Kind dna
Organism ESCHERICHIA COLI (STRAIN K12)
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6rkv.pdb ABCD FEGH 0
Biounits:
6rkv.pdb1.pdb ABCD FEGH 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
GyrB_insert Domain P0AES6_564-730 6.1e-56 1 No_clan B 564 730   
GyrB_insert Domain P0AES6_564-730 6.1e-56 1 No_clan D 564 730   
DNA_topoisoIV Family P0AES4_32-507 5.4e-153 1 No_clan A 32 507 EG  H-Bb H-Mj S-Bb S-Mj S-Mn L-Bb 
DNA_gyraseB_C Family P0AES6_731-790 9.6e-29 1 No_clan B 731 790 G  H-Bb 
Toprim Family P0AES6_419-532 1e-18 1 CL0413 B 419 532 G  L-Bb 
DNA_topoisoIV Family P0AES4_32-507 5.4e-153 1 No_clan C 32 507 FH  H-Bb S-Bb S-Mj S-Mn L-Bb 
DNA_gyraseB_C Family P0AES6_731-790 9.6e-29 1 No_clan D 731 790   
Toprim Family P0AES6_419-532 1e-18 1 CL0413 D 419 532 FH  L-Bb L-Mn 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/C=1-875 C chromosome
A/C=1-875 C cytoplasm
A/C=1-875 C cytosol
A/C=1-875 C DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex
A/C=1-875 C membrane
A/C=1-875 F ATP binding
A/C=1-875 F DNA binding
A/C=1-875 F DNA negative supercoiling activity
A/C=1-875 F DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
A/C=1-875 F DNA-dependent ATPase activity
A/C=1-875 F identical protein binding
A/C=1-875 P DNA topological change
A/C=1-875 P DNA-dependent DNA replication
A/C=1-875 P response to antibiotic
A/C=1-875 P response to drug
A/C=1-875 P transcription, DNA-templated
B/D=1-804 C chromosome
B/D=1-804 C cytoplasm
B/D=1-804 C cytosol
B/D=1-804 C DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex
B/D=1-804 F ATP binding
B/D=1-804 F DNA binding
B/D=1-804 F DNA negative supercoiling activity
B/D=1-804 F DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
B/D=1-804 F DNA-dependent ATPase activity
B/D=1-804 F metal ion binding
B/D=1-804 P DNA topological change
B/D=1-804 P DNA-dependent DNA replication
B/D=1-804 P response to antibiotic
B/D=1-804 P response to drug
B/D=1-804 P transcription, DNA-templated
Sequences
Download file with secondary structure created by Stride  
6rkv.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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G (dna): 
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H (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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