General information
PDB ID 6RKW
Title CRYOEM STRUCTURE OF THE COMPLETE E. COLI DNA GYRASE COMPLEX BOUND TO A 130 BP DNA DUPLEX
PDB header ISOMERASE
Date 2019-04-30
Experimental method ELECTRON MICROSCOPY
Resolution (A) 6.6
Kind dna
Organism ESCHERICHIA COLI (STRAIN K12)
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6rkw.pdb ACBD FEGH 0
Biounits:
6rkw.pdb1.pdb ACBD FEGH 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DNA_gyraseB Domain P0AES6_221-391 1.8e-59 1 CL0329 B 221 391   
GyrB_insert Domain P0AES6_564-730 2.5e-55 1 No_clan B 564 730   
HATPase_c Domain P0AES6_31-175 7.4e-22 1 CL0025 B 31 175   
DNA_gyraseB Domain P0AES6_221-391 1.8e-59 1 CL0329 D 221 391   
GyrB_insert Domain P0AES6_564-730 2.5e-55 1 No_clan D 564 730   
HATPase_c Domain P0AES6_31-175 7.4e-22 1 CL0025 D 31 175   
DNA_topoisoIV Family P0AES4_32-507 2.5e-152 1 No_clan A 32 507 EG  H-Bb S-Bb S-Mj S-Mn L-Bb 
DNA_gyraseB_C Family P0AES6_731-790 2.6e-28 1 No_clan B 731 790   
Toprim Family P0AES6_419-532 3.4e-18 1 CL0413 B 419 532 GE  L-Bb 
DNA_topoisoIV Family P0AES4_32-507 2.5e-152 1 No_clan C 32 507 FH  H-Bb S-Bb S-Mj S-Mn L-Bb 
DNA_gyraseB_C Family P0AES6_731-790 2.6e-28 1 No_clan D 731 790   
Toprim Family P0AES6_419-532 3.4e-18 1 CL0413 D 419 532 FGH  L-Bb L-Mn 
DNA_gyraseA_C Repeat P0AES4_692-739 8.9e-15 1 No_clan A 692 739 EG  S-Bb L-Bb 
DNA_gyraseA_C Repeat P0AES4_743-790 1.1e-13 1 No_clan A 743 790 EG  L-Bb L-Mn 
DNA_gyraseA_C Repeat P0AES4_793-840 1e-12 1 No_clan A 793 840 G  L-Bb 
DNA_gyraseA_C Repeat P0AES4_588-638 1.4e-10 1 No_clan A 588 638   
DNA_gyraseA_C Repeat P0AES4_538-585 2.3e-10 1 No_clan A 538 585 E  H-Bb 
DNA_gyraseA_C Repeat P0AES4_645-689 4.1e-07 1 No_clan A 645 689   
DNA_gyraseA_C Repeat P0AES4_692-739 8.9e-15 1 No_clan C 692 739 FH  S-Bb L-Bb L-Mj 
DNA_gyraseA_C Repeat P0AES4_743-790 1.1e-13 1 No_clan C 743 790 H  L-Bb L-Mn 
DNA_gyraseA_C Repeat P0AES4_793-840 1e-12 1 No_clan C 793 840 H  L-Bb 
DNA_gyraseA_C Repeat P0AES4_588-638 1.4e-10 1 No_clan C 588 638   
DNA_gyraseA_C Repeat P0AES4_538-585 2.3e-10 1 No_clan C 538 585   
DNA_gyraseA_C Repeat P0AES4_645-689 4.1e-07 1 No_clan C 645 689 H  S-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/C=1-875 C chromosome
A/C=1-875 C cytoplasm
A/C=1-875 C cytosol
A/C=1-875 C DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex
A/C=1-875 C membrane
A/C=1-875 F ATP binding
A/C=1-875 F DNA binding
A/C=1-875 F DNA negative supercoiling activity
A/C=1-875 F DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
A/C=1-875 F DNA-dependent ATPase activity
A/C=1-875 F identical protein binding
A/C=1-875 P DNA topological change
A/C=1-875 P DNA-dependent DNA replication
A/C=1-875 P response to antibiotic
A/C=1-875 P response to drug
A/C=1-875 P transcription, DNA-templated
B/D=1-804 C chromosome
B/D=1-804 C cytoplasm
B/D=1-804 C cytosol
B/D=1-804 C DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex
B/D=1-804 F ATP binding
B/D=1-804 F DNA binding
B/D=1-804 F DNA negative supercoiling activity
B/D=1-804 F DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
B/D=1-804 F DNA-dependent ATPase activity
B/D=1-804 F metal ion binding
B/D=1-804 P DNA topological change
B/D=1-804 P DNA-dependent DNA replication
B/D=1-804 P response to antibiotic
B/D=1-804 P response to drug
B/D=1-804 P transcription, DNA-templated
Sequences
Download file with secondary structure created by Stride  
6rkw.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
Click "SHOW" for view sequence
F (dna): 
Click "SHOW" for view sequence
G (dna): 
Click "SHOW" for view sequence
H (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
C (protein): 
Click "SHOW" for view sequence
D (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2021

text