General information
PDB ID 6RYU
Title NUCLEOSOME-CHD4 COMPLEX STRUCTURE (TWO CHD4 COPIES)
PDB header TRANSCRIPTION
Date 2019-06-12
Experimental method ELECTRON MICROSCOPY
Resolution (A) 4
Kind dna
Organism XENOPUS LAEVIS, SYNTHETIC CONSTRUCT, HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6ryu.pdb ABCDEFGHWV IJ 0
Biounits:
6ryu.pdb1.pdb ABCDEFGHWV IJ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Histone Domain P84233_37-132 7.9e-46 1 CL0012 A 38 131 IJ   
CENP-T_C Domain P62799_18-99 5.2e-08 1 CL0012 B 20 98 IJ   
Histone Domain P06897_19-91 1.2e-15 1 CL0012 C 16 90 IJ   
Histone Domain P02281_33-102 7.2e-22 1 CL0012 D 28 98 IJ   
Histone Domain P84233_37-132 2.5e-45 1 CL0012 E 39 131 IJ   
CENP-T_C Domain P62799_18-99 5.2e-08 1 CL0012 F 20 98 IJ   
Histone Domain P06897_19-91 8.9e-16 1 CL0012 G 14 90 IJ   
Histone Domain P02281_33-102 1.1e-21 1 CL0012 H 29 98 IJ   
SNF2-rel_dom Domain Q14839_728-1025 5.2e-62 1 CL0023 V 726 1025 IJ   
Helicase_C Domain Q14839_1050-1164 1.3e-22 1 CL0023 V 1050 1164 J   
Chromo Domain Q14839_622-674 1.8e-12 1 CL0049 V 622 674   
PHD Domain Q14839_451-496 5.8e-11 1 CL0390 V 451 496   
Chromo Domain Q14839_622-674 7.9e-05 0 CL0049 V 500 577   
SNF2-rel_dom Domain Q14839_728-1025 5.2e-62 1 CL0023 W 726 1025 IJ   
Helicase_C Domain Q14839_1050-1164 1.3e-22 1 CL0023 W 1050 1164 I   
Chromo Domain Q14839_622-674 1.8e-12 1 CL0049 W 622 674   
PHD Domain Q14839_451-496 5.8e-11 1 CL0390 W 451 496   
Chromo Domain Q14839_622-674 7.9e-05 0 CL0049 W 500 577 J   
Histone_H2A_C Family P06897_92-120 2.9e-17 1 No_clan C 91 118   
Histone_H2A_C Family P06897_92-120 3e-17 1 No_clan G 91 118   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/E=1-136 C nucleoplasm
A/E=1-136 C nucleosome
A/E=1-136 F DNA binding
A/E=1-136 F protein heterodimerization activity
B/F=1-103 C host cell nucleus
B/F=1-103 C nucleosome
B/F=1-103 C nucleus
B/F=1-103 F DNA binding
B/F=1-103 F protein heterodimerization activity
B/F=1-103 P DNA-templated transcription, initiation
C/G=1-130 C nucleosome
C/G=1-130 C nucleus
C/G=1-130 F DNA binding
C/G=1-130 F protein heterodimerization activity
D/H=5-126 C nucleosome
D/H=5-126 C nucleus
D/H=5-126 F DNA binding
D/H=5-126 F protein heterodimerization activity
V/W=1-1912 C centrosome
V/W=1-1912 C cytoplasm
V/W=1-1912 C membrane
V/W=1-1912 C nuclear chromatin
V/W=1-1912 C nucleoplasm
V/W=1-1912 C NuRD complex
V/W=1-1912 C protein-containing complex
V/W=1-1912 F ATP binding
V/W=1-1912 F DNA binding
V/W=1-1912 F DNA helicase activity
V/W=1-1912 F histone deacetylase binding
V/W=1-1912 F RNA polymerase II repressing transcription factor binding
V/W=1-1912 F zinc ion binding
V/W=1-1912 P ATP-dependent chromatin remodeling
V/W=1-1912 P regulation of signal transduction by p53 class mediator
V/W=1-1912 P regulation of transcription by RNA polymerase II
Sequences
Download file with secondary structure created by Stride  
6ryu.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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V (protein): 
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W (protein): 
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