General information
PDB ID 6S01
Title STRUCTURE OF LEDGF PWWP DOMAIN BOUND H3K36 METHYLATED NUCLEOSOME
PDB header TRANSCRIPTION
Date 2019-06-13
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.2
Kind dna
Organism XENOPUS LAEVIS, SYNTHETIC CONSTRUCT, HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6s01.pdb ABCDEFGHK IJ 0
Biounits:
6s01.pdb1.pdb ABCDEFGHK IJ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Histone Domain P84233_37-132 2e-45 1 CL0012 A 35 131 IJ   
CENP-T_C Domain P62799_18-99 4.7e-08 1 CL0012 B 25 98 IJ   
Histone Domain P06897_13-91 5.9e-16 1 CL0012 C 12 90 IJ   
Histone Domain P02281_33-102 1.1e-21 1 CL0012 D 29 98 IJ   
Histone Domain P84233_37-132 6.8e-45 1 CL0012 E 38 131 IJ   
CENP-T_C Domain P62799_18-99 5.2e-08 1 CL0012 F 23 98 IJ   
Histone Domain P06897_13-91 5.9e-16 1 CL0012 G 12 90 IJ   
Histone Domain P02281_33-102 1.1e-21 1 CL0012 H 29 98 IJ   
PWWP Domain O75475_8-89 2.2e-12 1 CL0049 K 8 89 IJ   
Histone_H2A_C Family P06897_92-120 3.1e-17 1 No_clan C 91 118   
Histone_H2A_C Family P06897_92-120 3.1e-17 1 No_clan G 91 118   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
B/F=2-103 C host cell nucleus
B/F=2-103 C nucleosome
B/F=2-103 C nucleus
B/F=2-103 F DNA binding
B/F=2-103 F protein heterodimerization activity
B/F=2-103 P DNA-templated transcription, initiation
D/H=5-126 C nucleosome
D/H=5-126 C nucleus
D/H=5-126 F DNA binding
D/H=5-126 F protein heterodimerization activity
K=1-530 C cytosol
K=1-530 C nuclear chromatin
K=1-530 C nuclear heterochromatin
K=1-530 C nuclear periphery
K=1-530 C nucleoplasm
K=1-530 C nucleus
K=1-530 C transcriptionally active chromatin
K=1-530 F activating transcription factor binding
K=1-530 F chromatin binding
K=1-530 F RNA binding
K=1-530 F supercoiled DNA binding
K=1-530 F transcription coactivator activity
K=1-530 P establishment of integrated proviral latency
K=1-530 P mRNA 5'-splice site recognition
K=1-530 P nuclear transport
K=1-530 P positive regulation of transcription by RNA polymerase II
K=1-530 P response to heat
K=1-530 P response to oxidative stress
Sequences
Download file with secondary structure created by Stride  
6s01.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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K (protein): 
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