General information
PDB ID 6SXB
Title XPF-ERCC1 CRYO-EM STRUCTURE, DNA-BOUND FORM
PDB header DNA BINDING PROTEIN
Date 2019-09-25
Experimental method ELECTRON MICROSCOPY
Resolution (A) 7.9
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6sxb.pdb FG CD 0
Biounits:
6sxb.pdb1.pdb FG CD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
ERCC4 Domain Q92889_686-816 1.3e-24 1 CL0236 F 686 816   
HHH_5 Domain P07992_134-181 3.3e-06 1 CL0198 G 237 291 C  H-Bb 
Rad10 Family P07992_100-213 3e-50 1 CL0236 G 100 213   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
F=1-916 C chromosome, telomeric region
F=1-916 C ERCC4-ERCC1 complex
F=1-916 C nuclear chromosome, telomeric region
F=1-916 C nucleoplasm
F=1-916 C nucleotide-excision repair complex
F=1-916 C nucleotide-excision repair factor 1 complex
F=1-916 C nucleus
F=1-916 F damaged DNA binding
F=1-916 F endodeoxyribonuclease activity
F=1-916 F identical protein binding
F=1-916 F promoter-specific chromatin binding
F=1-916 F protein C-terminus binding
F=1-916 F protein N-terminus binding
F=1-916 F single-stranded DNA binding
F=1-916 F single-stranded DNA endodeoxyribonuclease activity
F=1-916 F TFIID-class transcription factor complex binding
F=1-916 P cellular response to UV
F=1-916 P DNA repair
F=1-916 P double-strand break repair via homologous recombination
F=1-916 P double-strand break repair via nonhomologous end joining
F=1-916 P global genome nucleotide-excision repair
F=1-916 P interstrand cross-link repair
F=1-916 P negative regulation of double-stranded telomeric DNA binding
F=1-916 P negative regulation of protection from non-homologous end joining at telomere
F=1-916 P negative regulation of telomerase activity
F=1-916 P negative regulation of telomere maintenance
F=1-916 P negative regulation of telomere maintenance via telomere lengthening
F=1-916 P nucleotide-excision repair
F=1-916 P nucleotide-excision repair involved in interstrand cross-link repair
F=1-916 P nucleotide-excision repair, DNA incision
F=1-916 P nucleotide-excision repair, DNA incision, 3'-to lesion
F=1-916 P nucleotide-excision repair, DNA incision, 5'-to lesion
F=1-916 P nucleotide-excision repair, preincision complex stabilization
F=1-916 P regulation of autophagy
F=1-916 P resolution of meiotic recombination intermediates
F=1-916 P response to UV
F=1-916 P telomere maintenance
F=1-916 P telomeric DNA-containing double minutes formation
F=1-916 P transcription-coupled nucleotide-excision repair
F=1-916 P UV protection
G=1-297 C cytoplasm
G=1-297 C ERCC4-ERCC1 complex
G=1-297 C nuclear chromosome, telomeric region
G=1-297 C nucleoplasm
G=1-297 C nucleotide-excision repair complex
G=1-297 C nucleotide-excision repair factor 1 complex
G=1-297 F damaged DNA binding
G=1-297 F endonuclease activity
G=1-297 F promoter-specific chromatin binding
G=1-297 F protein C-terminus binding
G=1-297 F protein domain specific binding
G=1-297 F single-stranded DNA binding
G=1-297 F TFIID-class transcription factor complex binding
G=1-297 P cell population proliferation
G=1-297 P DNA recombination
G=1-297 P DNA repair
G=1-297 P double-strand break repair via nonhomologous end joining
G=1-297 P embryonic organ development
G=1-297 P global genome nucleotide-excision repair
G=1-297 P interstrand cross-link repair
G=1-297 P isotype switching
G=1-297 P male gonad development
G=1-297 P meiotic mismatch repair
G=1-297 P mitotic recombination
G=1-297 P multicellular organism aging
G=1-297 P multicellular organism growth
G=1-297 P negative regulation of protection from non-homologous end joining at telomere
G=1-297 P negative regulation of telomere maintenance
G=1-297 P nucleotide-excision repair
G=1-297 P nucleotide-excision repair, DNA incision
G=1-297 P nucleotide-excision repair, DNA incision, 3'-to lesion
G=1-297 P nucleotide-excision repair, DNA incision, 5'-to lesion
G=1-297 P nucleotide-excision repair, preincision complex stabilization
G=1-297 P oogenesis
G=1-297 P positive regulation of t-circle formation
G=1-297 P positive regulation of transcription initiation from RNA polymerase II promoter
G=1-297 P post-embryonic hemopoiesis
G=1-297 P pyrimidine dimer repair by nucleotide-excision repair
G=1-297 P replicative cell aging
G=1-297 P response to cadmium ion
G=1-297 P response to immobilization stress
G=1-297 P response to nutrient
G=1-297 P response to oxidative stress
G=1-297 P response to sucrose
G=1-297 P response to X-ray
G=1-297 P spermatogenesis
G=1-297 P syncytium formation
G=1-297 P t-circle formation
G=1-297 P telomeric DNA-containing double minutes formation
G=1-297 P transcription-coupled nucleotide-excision repair
G=1-297 P UV protection
G=1-297 P UV-damage excision repair
Sequences
Download file with secondary structure created by Stride  
6sxb.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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F (protein): 
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G (protein): 
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