General information
PDB ID 6T8H
Title CRYO-EM STRUCTURE OF THE DNA-BOUND POLD-PCNA PROCESSIVE COMPLEX FROM P. ABYSSI
PDB header REPLICATION
Date 2019-10-24
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.77
Kind dna
Organism PYROCOCCUS ABYSSI (STRAIN GE5 / ORSAY), SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6t8h.pdb EABCD PT 0
Biounits:
6t8h.pdb1.pdb EABCD PT 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
tRNA_anti-codon Domain Q9V2F3_69-124 0.0001 0 CL0021 A 267 332   
PCNA_N Domain Q9UYX8_2-125 3e-18 1 CL0060 C 2 125 T  H-Bb 
PCNA_C Domain Q9UYX8_124-246 7e-11 1 CL0060 C 124 246   
PCNA_N Domain Q9UYX8_2-125 3e-18 1 CL0060 D 2 125 P  H-Bb 
PCNA_C Domain Q9UYX8_124-246 7e-11 1 CL0060 D 124 246   
PCNA_N Domain Q9UYX8_2-125 3e-18 1 CL0060 E 2 125 PT  H-Bb 
PCNA_C Domain Q9UYX8_124-246 7e-11 1 CL0060 E 124 246   
DNA_pol_E_B Family Q9V2F3_355-564 9.5e-12 1 CL0163 A 355 564   
PolC_DP2 Family Q9V2F4_9-954 0 1 No_clan B 9 954 PT  H-Bb L-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A=1-619 F 3'-5' exonuclease activity
A=1-619 F DNA binding
A=1-619 F DNA-directed DNA polymerase activity
A=1-619 F exodeoxyribonuclease I activity
A=1-619 P DNA catabolic process, exonucleolytic
A=1-619 P DNA-dependent DNA replication
B=2-1455 F 3'-5' exonuclease activity
B=2-1455 F DNA binding
B=2-1455 F DNA-directed DNA polymerase activity
B=2-1455 F exodeoxyribonuclease I activity
B=2-1455 P DNA catabolic process, exonucleolytic
B=2-1455 P DNA-dependent DNA replication
B=2-1455 P intein-mediated protein splicing
C/D/E=1-249 F DNA binding
C/D/E=1-249 F DNA polymerase processivity factor activity
C/D/E=1-249 P DNA replication
C/D/E=1-249 P regulation of DNA replication
Sequences
Download file with secondary structure created by Stride  
6t8h.pdb1.pdb:   [ download sequences in FASTA format ]
P (dna): 
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T (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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