General information
PDB ID 6TEM
Title CENP-A NUCLEOSOME CORE PARTICLE WITH 145 BASE PAIRS OF THE WIDOM 601 SEQUENCE BY CRYO-EM
PDB header DNA BINDING PROTEIN
Date 2019-11-12
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.9
Kind dna
Organism HOMO SAPIENS, XENOPUS LAEVIS, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6tem.pdb ABCDEFGH IJ 0
Biounits:
6tem.pdb1.pdb ABCDEFGH IJ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Histone Domain P49450_48-133 8e-34 1 CL0012 A 47 133 IJ   
CENP-T_C Domain P62799_26-99 4.4e-08 1 CL0012 B 26 98 IJ   
Histone Domain P06897_19-91 8.6e-16 1 CL0012 C 14 90 IJ   
Histone Domain P02281_33-102 1.4e-21 1 CL0012 D 28 98 IJ   
Histone Domain P49450_48-133 8.3e-34 1 CL0012 E 47 133 IJ   
CENP-T_C Domain P62799_26-99 4.2e-08 1 CL0012 F 26 98 IJ   
Histone Domain P06897_19-91 8.4e-16 1 CL0012 G 14 90 IJ   
Histone Domain P02281_33-102 1.8e-21 1 CL0012 H 29 98 IJ   
Histone_H2A_C Family P06897_92-120 2.8e-16 1 No_clan C 91 117   
Histone_H2A_C Family P06897_92-120 2.5e-15 1 No_clan G 91 116   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/E=1-140 C chromosome, centromeric region
A/E=1-140 C condensed chromosome inner kinetochore
A/E=1-140 C condensed nuclear chromosome kinetochore
A/E=1-140 C condensed nuclear chromosome, centromeric region
A/E=1-140 C cytosol
A/E=1-140 C nuclear nucleosome
A/E=1-140 C nuclear pericentric heterochromatin
A/E=1-140 C nucleoplasm
A/E=1-140 C nucleus
A/E=1-140 F chromatin binding
A/E=1-140 F DNA binding
A/E=1-140 F protein heterodimerization activity
A/E=1-140 P CENP-A containing nucleosome assembly
A/E=1-140 P establishment of mitotic spindle orientation
A/E=1-140 P kinetochore assembly
A/E=1-140 P mitotic cytokinesis
A/E=1-140 P protein localization to chromosome, centromeric region
A/E=1-140 P viral process
B/F=1-103 C host cell nucleus
B/F=1-103 C nucleosome
B/F=1-103 C nucleus
B/F=1-103 F DNA binding
B/F=1-103 F protein heterodimerization activity
B/F=1-103 P DNA-templated transcription, initiation
D/H=2-126 C nucleosome
D/H=2-126 C nucleus
D/H=2-126 F DNA binding
D/H=2-126 F protein heterodimerization activity
Sequences
Download file with secondary structure created by Stride  
6tem.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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