General information
PDB ID 6U82
Title CRYSTAL STRUCTURE OF THE DOUBLE HOMEODOMAIN OF DUX4 IN COMPLEX WITH A DNA APTAMER CONTAINING BULGE AND LOOP
PDB header DNA BINDING PROTEIN/DNA
Date 2019-09-04
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.21
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6u82.pdb AD BE 0
Biounits:
6u82.pdb1.pdb A B 1
6u82.pdb2.pdb D E 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Homeodomain Domain Q9UBX2_98-149 1.5e-18 1 CL0123 A 95 149 B  H-Bb H-Mj L-Bb L-Mj 
Homeodomain Domain Q9UBX2_20-76 3.7e-17 1 CL0123 A 20 76 B  H-Bb H-Mj L-Bb L-Mn 
Homeodomain Domain Q9UBX2_98-149 1.6e-18 1 CL0123 D 95 149 E  H-Bb H-Mj L-Bb 
Homeodomain Domain Q9UBX2_20-76 3.8e-17 1 CL0123 D 20 76 E  H-Bb H-Mj L-Bb L-Mn 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/D=17-150 C cytosol
A/D=17-150 C Golgi apparatus
A/D=17-150 C nuclear membrane
A/D=17-150 C nucleolus
A/D=17-150 C nucleoplasm
A/D=17-150 C nucleus
A/D=17-150 F DNA-binding transcription activator activity, RNA polymerase II-specific
A/D=17-150 F DNA-binding transcription factor activity
A/D=17-150 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
A/D=17-150 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
A/D=17-150 F sequence-specific double-stranded DNA binding
A/D=17-150 F transcription regulatory region sequence-specific DNA binding
A/D=17-150 P apoptotic process
A/D=17-150 P multicellular organism development
A/D=17-150 P negative regulation of cell population proliferation
A/D=17-150 P negative regulation of G0 to G1 transition
A/D=17-150 P positive regulation of transcription by RNA polymerase II
A/D=17-150 P regulation of transcription by RNA polymerase II
Sequences
Download file with secondary structure created by Stride  
6u82.pdb1.pdb:   [ download sequences in FASTA format ]
B (dna): 
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A (protein): 
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6u82.pdb2.pdb:   [ download sequences in FASTA format ]
E (dna): 
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D (protein): 
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