General information
PDB ID 6UGM
Title STRUCTURAL BASIS OF COMPASS ECM RECOGNITION OF AN UNMODIFIED NUCLEOSOME
PDB header TRANSFERASE/STRUCTURAL PROTEIN/DNA
Date 2019-09-26
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.7
Kind dna
Organism XENOPUS LAEVIS, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6ugm.pdb ABCDEFGHKMNRXLOP IJ 0
Biounits:
6ugm.pdb1.pdb ABCDEFGHKMNRXLOP IJ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Histone Domain Q92133_39-132 5.8e-45 1 CL0012 A 38 131 IJ  H-Bb S-Bb L-Bb 
CENP-T_C Domain P62799_18-99 4.7e-08 1 CL0012 B 25 98 IJ  H-Bb S-Bb L-Bb 
Histone Domain Q6AZJ8_15-91 5.9e-16 1 CL0012 C 12 90 IJ  H-Bb L-Bb 
Histone Domain P02281_33-102 1.1e-21 1 CL0012 D 29 98 IJ  H-Bb L-Bb 
Histone Domain Q92133_39-132 1.3e-44 1 CL0012 E 39 131 IJ  H-Bb H-Mj S-Bb L-Bb L-Mn 
CENP-T_C Domain P62799_18-99 5.2e-08 1 CL0012 F 23 98 IJ  H-Bb S-Bb L-Bb 
Histone Domain Q6AZJ8_15-91 5.9e-16 1 CL0012 G 12 90 IJ  H-Bb L-Bb 
Histone Domain P02281_33-102 1.8e-21 1 CL0012 H 29 98 IJ  H-Bb S-Bb L-Bb 
N-SET Domain Q6CIT4_726-852 4.6e-07 1 No_clan M 726 869   
Histone_H2A_C Family Q6AZJ8_92-119 3.1e-17 1 No_clan C 91 118   
Histone_H2A_C Family Q6AZJ8_92-119 3.1e-17 1 No_clan G 91 118   
SET Family Q6CIT4_869-975 2.7e-18 1 No_clan M 869 975   
Dpy-30 Motif Q6CPN6_86-126 2.8e-16 1 CL0068 O 86 126   
Dpy-30 Motif Q6CPN6_86-126 1.1e-06 1 CL0068 P 86 126   
WD40 Repeat Q6CLY5_59-95 3.4e-06 1 CL0186 K 59 95   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
B/F=2-103 C host cell nucleus
B/F=2-103 C nucleosome
B/F=2-103 C nucleus
B/F=2-103 F DNA binding
B/F=2-103 F protein heterodimerization activity
B/F=2-103 P DNA-templated transcription, initiation
H=2-126 C nucleosome
H=2-126 C nucleus
H=2-126 F DNA binding
H=2-126 F protein heterodimerization activity
M=726-1000 C chromosome, telomeric region
M=726-1000 C Set1C/COMPASS complex
M=726-1000 F histone methyltransferase activity (H3-K4 specific)
M=726-1000 F RNA binding
M=726-1000 P ascospore formation
M=726-1000 P chromatin silencing at telomere
M=726-1000 P histone H3-K4 dimethylation
M=726-1000 P histone H3-K4 monomethylation
M=726-1000 P histone H3-K4 trimethylation
M=726-1000 P meiotic DNA double-strand break formation
M=726-1000 P negative regulation of histone H4 acetylation
M=726-1000 P negative regulation of transcription by RNA polymerase II
M=726-1000 P positive regulation of histone acetylation
M=726-1000 P positive regulation of synaptonemal complex assembly
M=726-1000 P positive regulation of transcription by RNA polymerase II
M=726-1000 P rDNA heterochromatin assembly
M=726-1000 P regulation of meiotic DNA double-strand break formation
M=726-1000 P regulation of transcription from RNA polymerase II promoter in response to stress
M=726-1000 P silent mating-type cassette heterochromatin assembly
M=726-1000 P sterol homeostasis
M=726-1000 P synaptonemal complex assembly
M=726-1000 P telomere maintenance
Sequences
Download file with secondary structure created by Stride  
6ugm.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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R (protein): 
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X (protein): 
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