General information
PDB ID 6UPL
Title STRUCTURE OF FACT_SUBNUCLEOSOME COMPLEX 2
PDB header TRANSCRIPTION/DNA
Date 2019-10-17
Experimental method ELECTRON MICROSCOPY
Resolution (A) 7.4
Kind dna
Organism HOMO SAPIENS, ESCHERICHIA COLI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6upl.pdb ABCDEFKLGH IJ 0
Biounits:
6upl.pdb1.pdb ABCDEFKLGH IJ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Histone Domain P68431_39-132 1e-46 1 CL0012 A 38 131 IJ   
CENP-T_C Domain P62805_26-99 4.2e-08 1 CL0012 B 26 98 IJ   
Histone Domain Q93077_16-91 2.6e-16 1 CL0012 C 11 90 J   
Histone Domain P62807_33-102 4.8e-22 1 CL0012 D 30 101 I   
Histone Domain P68431_39-132 4.9e-47 1 CL0012 E 37 131 IJ   
CENP-T_C Domain P62805_19-99 5.1e-08 1 CL0012 F 25 98 IJ   
SPT16 Domain Q9Y5B9_529-689 2.1e-50 1 CL0266 G 529 689 I   
Rtt106 Domain Q9Y5B9_808-895 7.6e-18 1 CL0266 G 808 895   
SSrecog Domain Q08945_106-170 2e-27 1 CL0266 H 106 170   
Rtt106 Domain Q08945_339-427 3e-26 1 CL0266 H 339 427   
POB3_N Domain Q08945_5-99 1.7e-18 1 CL0266 H 5 99   
Histone Domain Q93077_16-91 6.6e-16 1 CL0012 K 15 90 I   
Histone Domain P62807_33-102 8.6e-21 1 CL0012 L 35 101 J   
Histone_H2A_C Family Q93077_92-115 2.5e-17 1 No_clan C 91 118   
Histone_H2A_C Family Q93077_92-115 2.3e-17 1 No_clan K 91 118   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/E=1-136 C extracellular exosome
A/E=1-136 C extracellular region
A/E=1-136 C membrane
A/E=1-136 C nuclear chromosome
A/E=1-136 C nuclear nucleosome
A/E=1-136 C nucleoplasm
A/E=1-136 C nucleosome
A/E=1-136 C nucleus
A/E=1-136 C protein-containing complex
A/E=1-136 F cadherin binding
A/E=1-136 F DNA binding
A/E=1-136 F protein heterodimerization activity
A/E=1-136 P blood coagulation
A/E=1-136 P cellular protein metabolic process
A/E=1-136 P chromatin organization
A/E=1-136 P DNA replication-dependent nucleosome assembly
A/E=1-136 P interleukin-7-mediated signaling pathway
A/E=1-136 P negative regulation of gene expression, epigenetic
A/E=1-136 P nucleosome assembly
A/E=1-136 P rDNA heterochromatin assembly
A/E=1-136 P regulation of gene silencing
A/E=1-136 P regulation of gene silencing by miRNA
A/E=1-136 P regulation of megakaryocyte differentiation
A/E=1-136 P telomere organization
B/F=1-103 C extracellular exosome
B/F=1-103 C extracellular region
B/F=1-103 C host cell nucleus
B/F=1-103 C membrane
B/F=1-103 C nuclear chromosome
B/F=1-103 C nuclear chromosome, telomeric region
B/F=1-103 C nuclear nucleosome
B/F=1-103 C nucleoplasm
B/F=1-103 C nucleosome
B/F=1-103 C nucleus
B/F=1-103 C protein-containing complex
B/F=1-103 F DNA binding
B/F=1-103 F protein domain specific binding
B/F=1-103 F protein heterodimerization activity
B/F=1-103 F RNA binding
B/F=1-103 P cellular protein metabolic process
B/F=1-103 P CENP-A containing nucleosome assembly
B/F=1-103 P DNA replication-dependent nucleosome assembly
B/F=1-103 P DNA replication-independent nucleosome assembly
B/F=1-103 P DNA-templated transcription, initiation
B/F=1-103 P double-strand break repair via nonhomologous end joining
B/F=1-103 P negative regulation of gene expression, epigenetic
B/F=1-103 P negative regulation of megakaryocyte differentiation
B/F=1-103 P nucleosome assembly
B/F=1-103 P rDNA heterochromatin assembly
B/F=1-103 P regulation of gene silencing by miRNA
B/F=1-103 P regulation of megakaryocyte differentiation
B/F=1-103 P telomere capping
B/F=1-103 P telomere organization
C/K=1-130 C extracellular exosome
C/K=1-130 C nuclear chromatin
C/K=1-130 C nucleoplasm
C/K=1-130 C nucleosome
C/K=1-130 C nucleus
C/K=1-130 F DNA binding
C/K=1-130 F protein heterodimerization activity
C/K=1-130 P chromatin organization
C/K=1-130 P chromatin silencing
C/K=1-130 P negative regulation of cell population proliferation
D/L=1-126 C cytosol
D/L=1-126 C extracellular exosome
D/L=1-126 C extracellular space
D/L=1-126 C nucleoplasm
D/L=1-126 C nucleosome
D/L=1-126 C nucleus
D/L=1-126 F DNA binding
D/L=1-126 F identical protein binding
D/L=1-126 F protein heterodimerization activity
D/L=1-126 P antibacterial humoral response
D/L=1-126 P antimicrobial humoral immune response mediated by antimicrobial peptide
D/L=1-126 P defense response to Gram-positive bacterium
D/L=1-126 P innate immune response in mucosa
D/L=1-126 P nucleosome assembly
D/L=1-126 P protein ubiquitination
G=2-925 C FACT complex
G=2-925 C nucleoplasm
G=2-925 F histone binding
G=2-925 F nucleosome binding
G=2-925 F RNA binding
G=2-925 P DNA repair
G=2-925 P DNA replication
G=2-925 P DNA replication-independent nucleosome organization
G=2-925 P nucleosome disassembly
G=2-925 P positive regulation of DNA-templated transcription, elongation
G=2-925 P positive regulation of transcription elongation from RNA polymerase II promoter
G=2-925 P regulation of signal transduction by p53 class mediator
G=2-925 P transcription by RNA polymerase II
G=2-925 P transcription elongation from RNA polymerase II promoter
G=2-925 P viral process
H=1-640 C FACT complex
H=1-640 C nuclear chromatin
H=1-640 C nucleolus
H=1-640 C nucleoplasm
H=1-640 F DNA binding
H=1-640 F histone binding
H=1-640 F nucleosome binding
H=1-640 F RNA binding
H=1-640 P DNA repair
H=1-640 P DNA replication
H=1-640 P regulation of chromatin organization
H=1-640 P regulation of signal transduction by p53 class mediator
H=1-640 P transcription by RNA polymerase II
H=1-640 P transcription elongation from RNA polymerase II promoter
H=1-640 P viral process
Sequences
Download file with secondary structure created by Stride  
6upl.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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K (protein): 
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L (protein): 
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