General information
PDB ID 6UXW
Title SWI/SNF NUCLEOSOME COMPLEX WITH ADP-BEFX
PDB header TRANSCRIPTION/DNA
Date 2019-11-08
Experimental method ELECTRON MICROSCOPY
Resolution (A) 8.96
Kind dna
Organism XENOPUS LAEVIS, SYNTHETIC CONSTRUCT, SACCHAROMYCES CEREVISIAE S288C
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6uxw.pdb RSTUVWXYPQZABCDEFGHIJKLMNO ab 0
Biounits:
6uxw.pdb1.pdb RSTUVWXYPQZABCDEFGHIJKLMNO ab 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
SNF2-rel_dom Domain P22082_770-1065 3.5e-72 1 CL0023 A 770 1065 ab  H-Bb L-Bb 
Helicase_C Domain P22082_1087-1201 2.9e-20 1 CL0023 A 1087 1201 ab  H-Bb L-Bb 
HSA Domain P22082_591-660 7.1e-05 1 CL0023 A 591 660   
SWIRM Domain P32591_308-393 2.2e-29 1 CL0123 D 308 393   
SWIRM Domain P32591_308-393 1.5e-29 1 CL0123 E 308 393   
Myb_DNA-binding Domain P32591_524-569 1.2e-12 1 CL0123 F 524 569   
Myb_DNA-binding Domain P32591_524-569 9.6e-13 1 CL0123 G 524 569   
SWIB Domain P53628_63-138 5e-06 1 No_clan H 307 411   
Histone Domain P84233_37-132 3.8e-46 1 CL0012 R 37 131 ab  H-Bb H-Mj S-Bb L-Bb L-Mn 
CENP-T_C Domain P62799_18-99 4.7e-08 1 CL0012 S 25 98 ab  H-Bb S-Bb L-Bb 
Histone Domain P06897_13-91 5.9e-16 1 CL0012 T 12 90 ab  H-Bb S-Bb L-Bb 
Histone Domain P02281_33-102 1.1e-21 1 CL0012 U 29 98 ab  H-Bb L-Bb 
Histone Domain P84233_37-132 8.2e-45 1 CL0012 V 40 131 ab  H-Bb H-Mj S-Bb L-Bb L-Mn 
CENP-T_C Domain P62799_26-99 4.4e-08 1 CL0012 W 26 98 ab  H-Bb S-Bb L-Bb 
Histone Domain P06897_13-91 5.9e-16 1 CL0012 X 12 90 ab  H-Bb S-Bb L-Bb 
Histone Domain P02281_33-102 1.1e-21 1 CL0012 Y 29 98 ab  H-Bb L-Bb 
SNF5 Family P18480_123-246 3.9e-33 1 No_clan C 531 660   
SNF5 Family P18480_42-130 1.6e-17 1 No_clan C 450 538   
SWIRM-assoc_1 Family P32591_658-741 2.8e-24 1 No_clan F 658 741   
SWIRM-assoc_1 Family P32591_677-741 2.7e-15 1 No_clan G 648 741   
Actin Family Q12406_2-466 7.5e-55 1 CL0108 P 2 464   
Actin Family Q05123_18-375 3.8e-14 1 CL0108 Q 18 288   
Histone_H2A_C Family P06897_92-120 3.1e-17 1 No_clan T 91 118   
Histone_H2A_C Family P06897_92-120 3.1e-17 1 No_clan X 91 118   
Rtt102p Family P53330_5-90 3.8e-06 1 No_clan Z 33 90   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A=1-1703 C nucleus
A=1-1703 C SWI/SNF complex
A=1-1703 F ATP binding
A=1-1703 F DNA binding
A=1-1703 F DNA-dependent ATPase activity
A=1-1703 F helicase activity
A=1-1703 F lysine-acetylated histone binding
A=1-1703 F nucleosomal DNA binding
A=1-1703 F rDNA binding
A=1-1703 F RNA polymerase II activating transcription factor binding
A=1-1703 P aggrephagy
A=1-1703 P ATP-dependent chromatin remodeling
A=1-1703 P chromatin remodeling
A=1-1703 P DNA-dependent DNA replication
A=1-1703 P double-strand break repair
A=1-1703 P nucleosome mobilization
A=1-1703 P positive regulation of cell adhesion involved in single-species biofilm formation
A=1-1703 P positive regulation of invasive growth in response to glucose limitation
A=1-1703 P positive regulation of mating type switching
A=1-1703 P positive regulation of transcription by RNA polymerase II
A=1-1703 P positive regulation of transcription from RNA polymerase II promoter in response to amino acid starvation
A=1-1703 P response to oxidative stress
A=1-1703 P strand invasion
B=1-1314 C nucleus
B=1-1314 C SWI/SNF complex
B=1-1314 F metal ion binding
B=1-1314 F RNA polymerase II activating transcription factor binding
B=1-1314 F transcription regulatory region sequence-specific DNA binding
B=1-1314 P ATP-dependent chromatin remodeling
B=1-1314 P carbon catabolite activation of transcription from RNA polymerase II promoter
B=1-1314 P DNA-dependent DNA replication
B=1-1314 P positive regulation of mating type switching
B=1-1314 P positive regulation of transcription by RNA polymerase II
B=1-1314 P positive regulation of transcription from RNA polymerase II promoter in response to amino acid starvation
B=1-1314 P regulation of transcription by RNA polymerase II
C=1-905 C cytosol
C=1-905 C nucleus
C=1-905 C SWI/SNF complex
C=1-905 F RNA polymerase II activating transcription factor binding
C=1-905 P carbon catabolite activation of transcription from RNA polymerase II promoter
C=1-905 P chromatin remodeling
C=1-905 P double-strand break repair via homologous recombination
C=1-905 P positive regulation of invasive growth in response to glucose limitation
C=1-905 P positive regulation of transcription by RNA polymerase II
D/E/F/G=1-825 C cytosol
D/E/F/G=1-825 C nucleus
D/E/F/G=1-825 C SWI/SNF complex
D/E/F/G=1-825 F DNA binding
D/E/F/G=1-825 F histone binding
D/E/F/G=1-825 P ATP-dependent chromatin remodeling
D/E/F/G=1-825 P carbon catabolite activation of transcription from RNA polymerase II promoter
D/E/F/G=1-825 P positive regulation of mating type switching
D/E/F/G=1-825 P positive regulation of transcription by RNA polymerase II
D/E/F/G=1-825 P positive regulation of transcription, DNA-templated
H=1-566 C cytosol
H=1-566 C nucleus
H=1-566 C SWI/SNF complex
H=1-566 P positive regulation of transcription by RNA polymerase II
H=1-566 P positive regulation of transcription from RNA polymerase II promoter in response to amino acid starvation
I=1-150 C cytosol
I=1-150 C nucleus
I=1-150 C SWI/SNF complex
I=1-150 F rDNA binding
I=1-150 P chromatin remodeling
I=1-150 P maturation of LSU-rRNA
I=1-150 P nucleotide-excision repair
I=1-150 P positive regulation of transcription by RNA polymerase I
I=1-150 P positive regulation of transcription by RNA polymerase II
P=1-477 C NuA4 histone acetyltransferase complex
P=1-477 C nucleus
P=1-477 C RSC-type complex
P=1-477 C SWI/SNF complex
P=1-477 F chromatin binding
P=1-477 F structural molecule activity
P=1-477 P ATP-dependent chromatin remodeling
P=1-477 P chromatin organization
P=1-477 P histone H4 acetylation
P=1-477 P nucleosome disassembly
P=1-477 P nucleosome mobilization
P=1-477 P positive regulation of transcription by RNA polymerase II
P=1-477 P regulation of transcription by RNA polymerase II
P=1-477 P regulation of transcription, DNA-templated
P=1-477 P transcription elongation from RNA polymerase II promoter
Q=1-467 C nucleus
Q=1-467 C RSC-type complex
Q=1-467 C SWI/SNF complex
Q=1-467 F structural molecule activity
Q=1-467 P ATP-dependent chromatin remodeling
Q=1-467 P chromatin organization
Q=1-467 P nucleosome disassembly
Q=1-467 P nucleosome mobilization
Q=1-467 P nucleosome positioning
Q=1-467 P positive regulation of transcription by RNA polymerase II
Q=1-467 P regulation of transcription by RNA polymerase II
Q=1-467 P regulation of transcription, DNA-templated
Q=1-467 P transcription elongation from RNA polymerase II promoter
R/V=2-136 C nucleoplasm
R/V=2-136 C nucleosome
R/V=2-136 F DNA binding
R/V=2-136 F protein heterodimerization activity
S/W=2-103 C host cell nucleus
S/W=2-103 C nucleosome
S/W=2-103 C nucleus
S/W=2-103 F DNA binding
S/W=2-103 F protein heterodimerization activity
S/W=2-103 P DNA-templated transcription, initiation
T/X=2-130 C nucleosome
T/X=2-130 C nucleus
T/X=2-130 F DNA binding
T/X=2-130 F protein heterodimerization activity
U/Y=5-126 C nucleosome
U/Y=5-126 C nucleus
U/Y=5-126 F DNA binding
U/Y=5-126 F protein heterodimerization activity
Z=1-157 C nucleus
Z=1-157 C RSC-type complex
Z=1-157 C SWI/SNF complex
Z=1-157 P chromatin remodeling
Z=1-157 P chromosome segregation
Z=1-157 P nucleosome disassembly
Z=1-157 P transcription elongation from RNA polymerase II promoter
Sequences
Download file with secondary structure created by Stride  
6uxw.pdb1.pdb:   [ download sequences in FASTA format ]
a (dna): 
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b (dna): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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X (protein): 
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Y (protein): 
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Z (protein): 
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