General information
PDB ID 6VAA
Title STRUCTURE OF THE FANCONI ANEMIA ID COMPLEX BOUND TO ICL DNA
PDB header DNA BINDING PROTEIN/DNA
Date 2019-12-17
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.35
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6vaa.pdb AB WXYZ 0
Biounits:
6vaa.pdb1.pdb AB WXYZ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
FANCI_HD2 Family Q9NVI1_575-786 3e-78 1 No_clan A 545 786   
FANCI_S3 Family Q9NVI1_804-1032 1.7e-77 1 No_clan A 804 1032   
FANCI_S4 Family Q9NVI1_1045-1280 2.6e-70 1 No_clan A 1045 1280   
FANCI_S1 Family Q9NVI1_62-280 4.5e-70 1 No_clan A 62 280   
FANCI_S2 Family Q9NVI1_378-541 3.8e-60 1 No_clan A 378 541   
FANCI_HD1 Family Q9NVI1_284-370 1.3e-30 1 No_clan A 284 370   
FANCI_S1-cap Family Q9NVI1_1-53 1.2e-25 1 No_clan A 1 53   
FancD2 Family Q9BXW9_2-741 0 1 No_clan B 45 917 Y  H-Bb 
FancD2 Family Q9BXW9_742-1154 3.1e-216 1 No_clan B 851 1376 Y  H-Bb 
FANCI_S2 Family Q9BXW9_370-498 7e-05 0 No_clan B 416 579   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
B=1-1451 C condensed chromosome
B=1-1451 C cytosol
B=1-1451 C nuclear body
B=1-1451 C nucleolus
B=1-1451 C nucleoplasm
B=1-1451 C nucleus
B=1-1451 F DNA polymerase binding
B=1-1451 P brain morphogenesis
B=1-1451 P cellular response to oxidative stress
B=1-1451 P double-strand break repair involved in meiotic recombination
B=1-1451 P gamete generation
B=1-1451 P interstrand cross-link repair
B=1-1451 P intra-S DNA damage checkpoint
B=1-1451 P neuronal stem cell population maintenance
B=1-1451 P regulation of CD40 signaling pathway
B=1-1451 P regulation of DNA-binding transcription factor activity
B=1-1451 P regulation of inflammatory response
B=1-1451 P regulation of regulatory T cell differentiation
B=1-1451 P response to gamma radiation
B=1-1451 P synapsis
Sequences
Download file with secondary structure created by Stride  
6vaa.pdb1.pdb:   [ download sequences in FASTA format ]
W (dna): 
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X (dna): 
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Y (dna): 
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Z (dna): 
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A (protein): 
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B (protein): 
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