General information
PDB ID 6VOY
Title CRYO-EM STRUCTURE OF HTLV-1 INSTASOME
PDB header DNA BINDING PROTEIN/DNA
Date 2020-02-01
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.7
Kind dna
Organism HOMO SAPIENS, HUMAN T-CELL LEUKEMIA VIRUS TYPE I
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6voy.pdb ABCDEF IJKLMN 0
Biounits:
6voy.pdb1.pdb ABCDEF IJKLMN 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
rve Domain P14078_1222-1316 4.9e-22 1 CL0219 A 55 149 IKL  H-Bb H-Mn L-Bb L-Mj 
IN_DBD_C Domain P14078_1397-1441 7.7e-20 1 CL0010 A 230 274 M   
Integrase_Zn Domain P14078_1169-1203 1.6e-11 1 No_clan A 2 38 I  L-Bb 
rve Domain P14078_1222-1316 4.3e-22 1 CL0219 B 55 149   
IN_DBD_C Domain P14078_1397-1441 7e-20 1 CL0010 B 230 274 J  L-Bb 
Integrase_Zn Domain P14078_1169-1203 1.2e-11 1 No_clan B 2 53   
rve Domain P14078_1222-1316 4.9e-22 1 CL0219 C 55 149 JLNI  H-Bb H-Mn L-Bb 
IN_DBD_C Domain P14078_1397-1441 7.7e-20 1 CL0010 C 230 274 J   
Integrase_Zn Domain P14078_1169-1203 1.6e-11 1 No_clan C 2 38 L  H-Bb 
rve Domain P14078_1222-1316 4.3e-22 1 CL0219 D 55 149   
IN_DBD_C Domain P14078_1397-1441 7e-20 1 CL0010 D 230 274 M  L-Bb 
Integrase_Zn Domain P14078_1169-1203 1.2e-11 1 No_clan D 2 53   
B56 Repeat Q13362_30-372 1.4e-154 1 CL0020 E 31 372   
B56 Repeat Q13362_30-372 1.4e-154 1 CL0020 F 31 372   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B/C/D=1-64 C cytoplasm
A/B/C/D=1-64 F DNA binding
A/B/C/D=1-64 F endoribonuclease activity
E/F=30-372 C chromosome, centromeric region
E/F=30-372 C cytosol
E/F=30-372 C Golgi apparatus
E/F=30-372 C nucleoplasm
E/F=30-372 C nucleus
E/F=30-372 C protein phosphatase type 2A complex
E/F=30-372 F protein phosphatase activator activity
E/F=30-372 F protein phosphatase regulator activity
E/F=30-372 P DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
E/F=30-372 P intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
E/F=30-372 P negative regulation of cell population proliferation
E/F=30-372 P negative regulation of protein kinase B signaling
E/F=30-372 P proteasome-mediated ubiquitin-dependent protein catabolic process
E/F=30-372 P protein dephosphorylation
E/F=30-372 P regulation of phosphatidylinositol 3-kinase signaling
E/F=30-372 P regulation of protein autophosphorylation
E/F=30-372 P signal transduction
Sequences
Download file with secondary structure created by Stride  
6voy.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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K (dna): 
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L (dna): 
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M (dna): 
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N (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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