General information
PDB ID 6VVZ
Title MYCOBACTERIUM TUBERCULOSIS RNAP S456L MUTANT TRANSCRIPTION INITIATION INTERMEDIATE STRUCTURE WITH SORANGICIN
PDB header TRANSCRIPTION,TRANSFERASE/DNA/ANTIBIOTIC
Date 2020-02-18
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.72
Kind dna
Organism MYCOBACTERIUM TUBERCULOSIS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6vvz.pdb ABCDEFJM PO 0
Biounits:
6vvz.pdb1.pdb ABCDEFJM PO 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNA_pol_A_bac Domain P9WGZ1_52-152 6.6e-26 1 No_clan A 52 152   
RNA_pol_L Domain P9WGZ1_24-219 3.4e-19 1 CL0509 A 24 219   
RNA_pol_A_bac Domain P9WGZ1_52-152 7.4e-26 1 No_clan B 52 152   
RNA_pol_L Domain P9WGZ1_24-219 4.1e-19 1 CL0509 B 24 219   
RNA_pol_Rpb2_6 Domain P9WGY9_643-1062 1.3e-155 1 CL0410 C 643 1062   
RNA_pol_Rpb2_45 Domain P9WGY9_516-582 1.2e-27 1 No_clan C 516 582   
RNA_pol_Rpb2_3 Domain P9WGY9_438-506 5e-27 1 No_clan C 438 506 OP  L-Bb 
RNA_pol_Rpb2_2 Domain P9WGY9_181-379 1.5e-26 1 No_clan C 181 379 OP  L-Bb 
RNA_pol_Rpb2_7 Domain P9WGY9_1064-1140 1e-25 1 No_clan C 1064 1140   
RNA_pol_Rpb1_1 Domain P9WGY7_4-417 2.5e-82 1 No_clan D 4 417 OP  H-Bb L-Bb 
RNA_pol_Rpb1_5 Domain 3.6e-37 1 No_clan D 843 1026
RNA_pol_Rpb1_2 Domain P9WGY7_419-561 1.8e-35 1 No_clan D 419 561   
RNA_pol_Rpb1_3 Domain P9WGY7_564-736 4.8e-27 1 No_clan D 564 736   
RNA_pol_Rpb1_5 Domain 8.6e-15 1 No_clan D 1061 1218
RNA_pol_Rpb1_4 Domain P9WGY7_748-843 6.7e-08 1 No_clan D 748 843   
Sigma70_r2 Domain P9WGI1_295-365 1.2e-22 1 CL0123 F 295 365 OP  H-Bb H-Mj 
Sigma70_r4 Domain P9WGI1_463-516 7.4e-19 1 CL0123 F 463 516 OP  H-Bb H-Mj L-Bb L-Mj 
RNA_pol_Rpb2_1 Family P9WGY9_52-425 2.5e-21 1 No_clan C 52 425 OP  L-Bb 
RNA_pol_Rpb6 Family P9WGY5_42-105 5.8e-14 1 No_clan E 42 105   
Sigma70_r3 Family P9WGI1_374-451 5.4e-29 1 CL0123 F 374 451 P   
Sigma70_r1_2 Family P9WGI1_226-259 1.5e-16 1 No_clan F 226 259 O   
RbpA Family P9WHJ5_4-106 4.3e-40 1 No_clan J 4 106 O  L-Bb 
CarD_CdnL_TRCF Family P9WJG3_3-111 8.1e-20 1 CL0123 M 3 111 OP  H-Bb 
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
6vvz.pdb1.pdb:   [ download sequences in FASTA format ]
O (dna): 
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P (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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J (protein): 
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M (protein): 
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