General information
PDB ID 6VZ4
Title CRYO-EM STRUCTURE OF STH1-ARP7-ARP9-RTT102 BOUND TO THE NUCLEOSOME IN ADP BERYLLIUM FLUORIDE STATE
PDB header MOTOR PROTEIN
Date 2020-02-27
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.9
Kind dna
Organism XENOPUS LAEVIS, SYNTHETIC CONSTRUCT, SACCHAROMYCES CEREVISIAE
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6vz4.pdb ABCDEFGHKLMN IJ 10
Biounits:
6vz4.pdb1.pdb ABCDEFGHKLMN IJ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Histone Domain Q92133_39-132 2.5e-45 1 CL0012 A 38 132 IJ  H-Bb H-Mj S-Bb L-Bb L-Mn 
CENP-T_C Domain P62799_18-99 5.1e-08 1 CL0012 B 20 99 IJ  H-Bb S-Bb L-Bb 
Histone Domain Q6AZJ8_15-91 5.9e-16 1 CL0012 C 13 91 IJ  H-Bb S-Bb L-Bb 
Histone Domain Q92130_34-102 2.9e-21 1 CL0012 D 34 102 IJ  H-Bb S-Bb L-Bb 
Histone Domain Q92133_39-132 4.7e-44 1 CL0012 E 41 132 IJ  H-Bb H-Mj S-Bb L-Bb 
CENP-T_C Domain P62799_26-99 4.4e-08 1 CL0012 F 27 99 IJ  H-Bb S-Bb L-Bb 
Histone Domain Q6AZJ8_15-91 5.9e-16 1 CL0012 G 13 91 IJ  H-Bb S-Bb L-Bb 
Histone Domain Q92130_34-102 2.9e-21 1 CL0012 H 34 102 IJ  H-Bb S-Bb L-Bb 
SNF2-rel_dom Domain P32597_473-769 1.3e-76 1 CL0023 K 473 769 IJ  H-Bb L-Bb 
Helicase_C Domain P32597_791-905 1.1e-20 1 CL0023 K 791 905 IJ  H-Bb S-Bb L-Bb 
HSA Domain P32597_314-382 3.6e-10 1 CL0023 K 316 382   
Histone_H2A_C Family Q6AZJ8_92-119 3.1e-17 1 No_clan C 92 119   
Histone_H2A_C Family Q6AZJ8_92-119 3.1e-17 1 No_clan G 92 119   
Actin Family Q12406_2-466 6.4e-55 1 CL0108 L 2 464   
Actin Family Q05123_18-375 3.8e-14 1 CL0108 M 18 288   
Rtt102p Family P53330_5-90 7.5e-07 1 No_clan N 33 90   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
6vz4.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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