General information
PDB ID 6WGC
Title ATOMIC MODEL OF SEMI-ATTACHED MUTANT OCCM-DNA COMPLEX (ORC-CDC6-CDT1- MCM2-7 WITH MCM6 WHD TRUNCATION)
PDB header REPLICATION/DNA
Date 2020-04-05
Experimental method ELECTRON MICROSCOPY
Resolution (A) 4.3
Kind dna
Organism SACCHAROMYCES CEREVISIAE
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6wgc.pdb 9ABCEDF37 GH 0
Biounits:
6wgc.pdb1.pdb 9ABCEDF37 GH 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
AAA_22 Domain P09119_97-267 2.6e-13 1 CL0023 9 97 267   
Cdc6_C Domain P09119_418-498 3.6e-06 1 CL0123 9 418 500   
AAA_lid_10 Domain P54784_637-730 8.6e-35 1 CL0671 A 637 775   
AAA Domain P54784_475-621 5.5e-19 1 CL0023 A 475 621 G  L-Bb 
ORC_WH_C Domain P54790_484-613 3.1e-16 1 CL0123 C 484 613   
AAA_22 Domain P54791_52-181 7e-05 0 CL0023 D 91 257   
AAA_22 Domain P50874_28-177 1.6e-06 1 CL0023 E 28 177 G  H-Bb 
ORC2 Family P32833_259-608 4.6e-101 1 No_clan B 259 608 H  H-Bb L-Bb 
ORC4_C Family P54791_286-517 1.6e-36 1 CL0671 D 286 517 HG  H-Bb H-Mj L-Bb 
ORC5_C Family P50874_187-335 1.1e-24 1 No_clan E 187 374 H  H-Bb 
ORC5_C Family P50874_335-421 1.5e-23 1 No_clan E 352 474 H  L-Bb 
ORC6 Family P38826_271-416 1.4e-45 1 No_clan F 271 416   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
3=1-971 C chromosome, telomeric region
3=1-971 C CMG complex
3=1-971 C cytoplasm
3=1-971 C DNA replication preinitiation complex
3=1-971 C MCM complex
3=1-971 C nuclear pre-replicative complex
3=1-971 C nucleoplasm
3=1-971 C nucleus
3=1-971 C replication fork protection complex
3=1-971 F ATP binding
3=1-971 F chromatin binding
3=1-971 F DNA helicase activity
3=1-971 F DNA replication origin binding
3=1-971 F MCM complex binding
3=1-971 F single-stranded DNA binding
3=1-971 P chromatin silencing at telomere
3=1-971 P DNA replication initiation
3=1-971 P DNA strand elongation involved in DNA replication
3=1-971 P double-strand break repair via break-induced replication
3=1-971 P mitotic DNA replication initiation
3=1-971 P pre-replicative complex assembly involved in nuclear cell cycle DNA replication
3=1-971 P silent mating-type cassette heterochromatin assembly
7=1-845 C chromosome, telomeric region
7=1-845 C CMG complex
7=1-845 C cytoplasm
7=1-845 C DNA replication preinitiation complex
7=1-845 C MCM complex
7=1-845 C MCM core complex
7=1-845 C nuclear pre-replicative complex
7=1-845 C nucleoplasm
7=1-845 C nucleus
7=1-845 C replication fork protection complex
7=1-845 F ATP binding
7=1-845 F chromatin binding
7=1-845 F DNA replication origin binding
7=1-845 F MCM complex binding
7=1-845 F single-stranded DNA binding
7=1-845 F single-stranded DNA helicase activity
7=1-845 P chromatin silencing at telomere
7=1-845 P DNA replication initiation
7=1-845 P DNA strand elongation involved in DNA replication
7=1-845 P DNA unwinding involved in DNA replication
7=1-845 P double-strand break repair via break-induced replication
7=1-845 P nuclear DNA replication
7=1-845 P pre-replicative complex assembly involved in nuclear cell cycle DNA replication
7=1-845 P silent mating-type cassette heterochromatin assembly
9=1-513 C chromosome
9=1-513 C cytoplasm
9=1-513 C DNA replication preinitiation complex
9=1-513 C nuclear pre-replicative complex
9=1-513 C nucleus
9=1-513 F ATP binding
9=1-513 F ATPase activity
9=1-513 F chromatin binding
9=1-513 F DNA replication origin binding
9=1-513 F GTP binding
9=1-513 F GTPase activity
9=1-513 P cell division
9=1-513 P DNA replication initiation
9=1-513 P G1/S transition of mitotic cell cycle
9=1-513 P mitotic cell cycle
9=1-513 P mitotic DNA replication checkpoint
9=1-513 P pre-replicative complex assembly involved in nuclear cell cycle DNA replication
9=1-513 P regulation of chromatin silencing at telomere
9=1-513 P regulation of DNA-dependent DNA replication initiation
A=1-913 C DNA replication preinitiation complex
A=1-913 C nuclear chromosome, telomeric region
A=1-913 C nuclear origin of replication recognition complex
A=1-913 C nuclear pre-replicative complex
A=1-913 C nucleus
A=1-913 F ATP binding
A=1-913 F ATPase activity
A=1-913 F chromatin binding
A=1-913 F DNA replication origin binding
A=1-913 F metal ion binding
A=1-913 F nucleosome binding
A=1-913 P DNA replication initiation
A=1-913 P maintenance of rDNA
A=1-913 P mitotic cell cycle
A=1-913 P mitotic DNA replication checkpoint
A=1-913 P pre-replicative complex assembly involved in nuclear cell cycle DNA replication
A=1-913 P silent mating-type cassette heterochromatin assembly
B=1-620 C chromosome, telomeric region
B=1-620 C DNA replication preinitiation complex
B=1-620 C nuclear origin of replication recognition complex
B=1-620 C nuclear pre-replicative complex
B=1-620 F chromatin binding
B=1-620 F DNA replication origin binding
B=1-620 P chromatin silencing at telomere
B=1-620 P DNA replication initiation
B=1-620 P histone H3-K4 methylation
B=1-620 P pre-replicative complex assembly involved in nuclear cell cycle DNA replication
B=1-620 P silent mating-type cassette heterochromatin assembly
C=1-616 C DNA replication preinitiation complex
C=1-616 C nuclear origin of replication recognition complex
C=1-616 C nuclear pre-replicative complex
C=1-616 F chromatin binding
C=1-616 F DNA replication origin binding
C=1-616 P DNA replication initiation
C=1-616 P pre-replicative complex assembly involved in nuclear cell cycle DNA replication
C=1-616 P silent mating-type cassette heterochromatin assembly
D=1-529 C DNA replication preinitiation complex
D=1-529 C nuclear origin of replication recognition complex
D=1-529 C nuclear pre-replicative complex
D=1-529 F DNA replication origin binding
D=1-529 P DNA replication initiation
D=1-529 P pre-replicative complex assembly involved in nuclear cell cycle DNA replication
D=1-529 P silent mating-type cassette heterochromatin assembly
E=1-479 C DNA replication preinitiation complex
E=1-479 C nuclear origin of replication recognition complex
E=1-479 C nuclear pre-replicative complex
E=1-479 F ATP binding
E=1-479 F DNA replication origin binding
E=1-479 P DNA replication initiation
E=1-479 P pre-replicative complex assembly involved in nuclear cell cycle DNA replication
E=1-479 P regulation of chromatin silencing at telomere
E=1-479 P silent mating-type cassette heterochromatin assembly
F=1-435 C DNA replication preinitiation complex
F=1-435 C nuclear origin of replication recognition complex
F=1-435 C nuclear pre-replicative complex
F=1-435 F DNA replication origin binding
F=1-435 P DNA replication initiation
F=1-435 P pre-replicative complex assembly involved in nuclear cell cycle DNA replication
F=1-435 P silent mating-type cassette heterochromatin assembly
Sequences
Download file with secondary structure created by Stride  
6wgc.pdb1.pdb:   [ download sequences in FASTA format ]
G (dna): 
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H (dna): 
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3 (protein): 
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7 (protein): 
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9 (protein): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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