General information
PDB ID 6WR6
Title ESCHERICHIA COLI RNA POLYMERASE AND RRNBP1 PROMOTER CLOSED COMPLEX
PDB header TRANSCRIPTION/DNA
Date 2020-04-29
Experimental method ELECTRON MICROSCOPY
Resolution (A) 4.14
Kind dna
Organism ESCHERICHIA COLI (STRAIN K12), ESCHERICHIA COLI K-12
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6wr6.pdb ABCDEF XYOP 0
Biounits:
6wr6.pdb1.pdb ABCDEF XYOP 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNA_pol_A_CTD Domain P0A7Z4_241-304 7.3e-24 1 CL0198 A 243 309 XY  H-Bb L-Bb 
RNA_pol_A_bac Domain P0A7Z4_55-151 1.7e-23 1 No_clan A 58 186   
RNA_pol_L Domain P0A7Z4_24-223 3.2e-22 1 CL0509 A 29 228   
RNA_pol_A_CTD Domain P0A7Z4_241-304 7.6e-24 1 CL0198 B 243 309 XY  H-Bb L-Bb 
RNA_pol_A_bac Domain P0A7Z4_55-151 1.8e-23 1 No_clan B 58 186   
RNA_pol_L Domain P0A7Z4_29-228 3.4e-22 1 CL0509 B 29 228   
RNA_pol_Rpb2_6 Domain P0A8V2_717-1264 3.2e-160 1 CL0410 C 717 1264   
RNA_pol_Rpb2_3 Domain P0A8V2_513-581 1.7e-29 1 No_clan C 513 581 O  L-Mj 
RNA_pol_Rpb2_45 Domain P0A8V2_591-656 2.1e-27 1 No_clan C 591 656   
RNA_pol_Rpb2_7 Domain P0A8V2_1266-1342 3.1e-27 1 No_clan C 1266 1342   
RNA_pol_Rpb2_2 Domain P0A8V2_339-453 6.1e-15 1 No_clan C 329 454   
RNA_pol_Rpb2_2 Domain P0A8V2_150-224 2.7e-07 1 No_clan C 151 276   
RNA_pol_Rpb1_1 Domain P0A8T7_3-330 7.7e-90 1 No_clan D 14 342 P  H-Bb L-Bb 
RNA_pol_Rpb1_5 Domain P0A8T7_754-1282 4.4e-68 1 No_clan D 766 1317 O  L-Bb 
RNA_pol_Rpb1_2 Domain P0A8T7_380-473 4.2e-27 1 No_clan D 386 486   
RNA_pol_Rpb1_3 Domain P0A8T7_477-632 5.1e-27 1 No_clan D 489 644   
RNA_pol_Rpb1_4 Domain P0A8T7_662-751 1.5e-18 1 No_clan D 673 764   
RNA_pol_Rpb1_2 Domain P0A8T7_332-381 1.3e-07 1 No_clan D 344 401   
Sigma70_ner Domain P00579_55-184 2.3e-45 1 CL0123 F 167 348   
Sigma70_r2 Domain P00579_215-284 1e-21 1 CL0123 F 379 449 XY  H-Bb L-Bb L-Mj 
Sigma70_r4 Domain P00579_383-436 3.4e-19 1 CL0123 F 547 600 XY  H-Bb H-Mj L-Mj 
Sigma70_ner Domain P00579_24-54 2.9e-09 1 CL0123 F 137 215   
RNA_pol_Rpb2_1 Family P0A8V2_26-500 2.6e-58 1 No_clan C 26 500   
RNA_pol_Rpb6 Family P0A800_8-60 3.7e-17 1 No_clan E 8 60   
Sigma70_r3 Family P00579_294-369 7.5e-30 1 CL0123 F 458 535   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=1-329 C cytoplasm
A/B=1-329 C cytosol
A/B=1-329 C membrane
A/B=1-329 F DNA binding
A/B=1-329 F DNA-directed 5'-3' RNA polymerase activity
A/B=1-329 F protein dimerization activity
A/B=1-329 P transcription, DNA-templated
C=1-1342 C cytoplasm
C=1-1342 C cytosol
C=1-1342 C membrane
C=1-1342 F DNA binding
C=1-1342 F DNA-directed 5'-3' RNA polymerase activity
C=1-1342 F ribonucleoside binding
C=1-1342 P response to antibiotic
C=1-1342 P transcription, DNA-templated
D=1-1407 C cytoplasm
D=1-1407 C cytosol
D=1-1407 C membrane
D=1-1407 F DNA binding
D=1-1407 F DNA-directed 5'-3' RNA polymerase activity
D=1-1407 F magnesium ion binding
D=1-1407 F zinc ion binding
D=1-1407 P response to antibiotic
D=1-1407 P transcription, DNA-templated
E=1-91 C cytosol
E=1-91 C RNA polymerase complex
E=1-91 F DNA binding
E=1-91 F DNA-directed 5'-3' RNA polymerase activity
E=1-91 P protein-containing complex assembly
E=1-91 P transcription, DNA-templated
F=1-613 C cytosol
F=1-613 F DNA binding
F=1-613 F DNA-binding transcription factor activity
F=1-613 F sigma factor activity
F=1-613 P response to heat
F=1-613 P transcription initiation from bacterial-type RNA polymerase promoter
Sequences
Download file with secondary structure created by Stride  
6wr6.pdb1.pdb:   [ download sequences in FASTA format ]
O (dna): 
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P (dna): 
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X (dna): 
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Y (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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